BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0101.p
         (136 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981958|ref|YP_001351863.1| IIA component of sugar transpor...   207   2e-55

>gi|152981958|ref|YP_001351863.1| IIA component of sugar transport
           PTS system [Janthinobacterium sp. Marseille]
          Length = 135

 Score =  207 bits (528), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/133 (76%), Positives = 118/133 (88%)

Query: 1   MVGILLLTHAPLGQAFVAAATHVFRGRPERMEAIDVIADQNPAEVQKLAIEAVERLDDGS 60
           MVGILLLTHAPLGQAF++AATHVFR RPE ++A+DV ADQ+  EV++LA +A+  LDDGS
Sbjct: 1   MVGILLLTHAPLGQAFISAATHVFRTRPEHLDAVDVNADQDTGEVERLAKKAIAGLDDGS 60

Query: 61  GVLVITDVMGGTPSNCTGFLCGLGNVQVIAGISLPMLLRALTYRNDTLDVVVEMALAGGQ 120
           GVLVITDVMGGTPSNCT  LC + NV VIAGISLPMLLRA+TYR DTLDVVVEMALAGGQ
Sbjct: 61  GVLVITDVMGGTPSNCTLGLCNVDNVAVIAGISLPMLLRAITYRQDTLDVVVEMALAGGQ 120

Query: 121 NGAVRIDNRIRVA 133
            GAVR+DNR+R++
Sbjct: 121 GGAVRVDNRVRLS 133


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 339,409
Number of extensions: 13913
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 1,221,021
Length adjustment: 74
Effective length of query: 62
Effective length of database: 947,443
Effective search space: 58741466
Effective search space used: 58741466
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)