BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0098.p (511 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981218|ref|YP_001351860.1| ammonium transporter [Janthinob... 520 e-148 gi|152980667|ref|YP_001352279.1| ammonium transporter [Janthinob... 414 e-117 gi|152980791|ref|YP_001354200.1| ammonium transporter [Janthinob... 119 6e-28 >gi|152981218|ref|YP_001351860.1| ammonium transporter [Janthinobacterium sp. Marseille] Length = 467 Score = 520 bits (1338), Expect = e-148, Method: Compositional matrix adjust. Identities = 288/435 (66%), Positives = 339/435 (77%), Gaps = 33/435 (7%) Query: 77 VPNKGDTAWMLISTAFVILMTLPGLGLFYGGLVRSKNMLSVLMQCFVIFSLIYILWFVYG 136 V N GDTAWML ST VILMT+PGL LFYGGL RSKNMLSVLMQ FVIFS I +LW +YG Sbjct: 65 VLNTGDTAWMLTSTMLVILMTIPGLALFYGGLGRSKNMLSVLMQVFVIFSTITVLWCLYG 124 Query: 137 YSIAFTEGNAFFGGFDRLFLHGLTGDSNTGTFSKGVVIPELSFVAFQGAFAAITVALIIG 196 YS+ F +G +F G F +LFL+G+ D+ +G+ IPE F+AFQ FAAIT ALI+G Sbjct: 125 YSLVFADGGSFVGTFGKLFLNGVKPDTLSGS------IPEYVFIAFQSTFAAITCALIVG 178 Query: 197 SFAERVKFSAVILFSILWFTFSYLPMAHMVWFWPGPDAFTDAAAAEKATAISGWLFQKGA 256 +FAER+KF+AV+ FSILWFTFSY+P+AHMVW A +G LF GA Sbjct: 179 AFAERMKFAAVLAFSILWFTFSYIPVAHMVW------------------APTGLLFADGA 220 Query: 257 LDFAGGTVVHINAAIAGLVGSYVIGKRIGFGKEAFKPHSLTLTMVGASLLWFGWFGFNAG 316 LDFAGGTVVHINA +AGLVG+Y++GKRIGFGKEA PHSLTLTMVGASLLW GWFGFNAG Sbjct: 221 LDFAGGTVVHINAGVAGLVGAYMVGKRIGFGKEAMPPHSLTLTMVGASLLWVGWFGFNAG 280 Query: 317 SALEANGSAALAFVNTILATAAAVLSWSFGEWIGKGKPSMLGAASGAVAGLVAITPAAGF 376 SAL AN A LAF+NTILAT AA L+W E + KGK SMLGAASGAVAGLV ITPAAGF Sbjct: 281 SALGANPIAGLAFINTILATGAATLAWITTESMLKGKASMLGAASGAVAGLVGITPAAGF 340 Query: 377 VGVIGAVVMGLIAGLLCLWGVSGLKKILGSDDALDVFGVHGVGGILGALLTGVFAAPSLG 436 VG +G++V+GLI G +C+WGVSGLK++LG+DDA DVFGVHGVGGI+GA+LTGV AAPS G Sbjct: 341 VGPMGSIVLGLIVGAVCVWGVSGLKRLLGADDAFDVFGVHGVGGIVGAILTGVLAAPSFG 400 Query: 437 GTGIYDYVANAVAPDYSIGGQVWIQFQGVLTTVILSGVVSFIAYKIVDVVIGLRVTEEEE 496 GTG A D+SI QV +QF+ VL TV+ + VV+FI YK+VD+VIGLRV++E E Sbjct: 401 GTG---------AADFSIAHQVMVQFKAVLITVVWTAVVAFIIYKLVDLVIGLRVSDEAE 451 Query: 497 REGLDISSHGESAYH 511 REGLDI+SHGE+AYH Sbjct: 452 REGLDITSHGETAYH 466 >gi|152980667|ref|YP_001352279.1| ammonium transporter [Janthinobacterium sp. Marseille] Length = 483 Score = 414 bits (1065), Expect = e-117, Method: Compositional matrix adjust. Identities = 235/485 (48%), Positives = 301/485 (62%), Gaps = 46/485 (9%) Query: 35 EAAAAAAAAPAAAAPAAP-KADAAAPAAAAPAAPAAAAAAPAPVP--------NKGDTAW 85 + A A PAA A+P A A A P AP P + GDTAW Sbjct: 30 QGTATDTAPPAAEVQASPLTMPMIAEPTQADATPEPVVEAPLTKPTVVDASKISAGDTAW 89 Query: 86 MLISTAFVILMTLPGLGLFYGGLVRSKNMLSVLMQCFVIFSLIYILWFVYGYSIAFTEGN 145 +L STA V+ MT+PGL LFY G+VR KN+L+ + F + L+ ++W V GYS+AFT G+ Sbjct: 90 LLASTALVLFMTIPGLALFYAGMVRKKNVLATMAHSFAVTCLVTVIWVVIGYSLAFTPGS 149 Query: 146 AFFGGFDRLFLHGLTGDSNTGTFSKGVV---IPELSFVAFQGAFAAITVALIIGSFAERV 202 + GG DR+ L+G+ G S + IPE F+ FQ FA IT ALI G+FAER+ Sbjct: 150 PYIGGLDRVLLNGMEFAKEAGKVSVSEIAPTIPESVFIMFQMTFAIITPALITGAFAERM 209 Query: 203 KFSAVILFSILWFTFSYLPMAHMVWFWPGPDAFTDAAAAEKATAISGWLFQKGALDFAGG 262 KFSA+++F LW F Y P+AH VW PG GWL +G LDFAGG Sbjct: 210 KFSALLMFITLWSIFVYAPVAHWVWE-PG-----------------GWLATRGVLDFAGG 251 Query: 263 TVVHINAAIAGLVGSYVIGKRIGFGKEAFKPHSLTLTMVGASLLWFGWFGFNAGSALEAN 322 TVVHINA ++GLV + +IG R+GFGKE PH+L LT++GAS+LW GWFGFNAGSA+ A+ Sbjct: 252 TVVHINAGVSGLVAAIIIGPRLGFGKEPMPPHNLVLTVIGASMLWVGWFGFNAGSAVAAD 311 Query: 323 GSAALAFVNTILATAAAVLSWSFGEWIGKGKPSMLGAASGAVAGLVAITPAAGFVGVIGA 382 G A +A + T +ATA L+W EW+ +GKPS+LG SGAV+GLVAITPA+GFVGV GA Sbjct: 312 GRAGMAMLATQIATAVGALAWMLIEWLRRGKPSVLGLVSGAVSGLVAITPASGFVGVSGA 371 Query: 383 VVMGLIAGLLCLWGVSGLKKILGSDDALDVFGVHGVGGILGALLTGVFAAPSLGGTGIYD 442 +V+G AGL C WG + LK LG DD+LDVFGVH +GGI+GALLTG+FA S+GG Sbjct: 372 LVIGTAAGLACYWGATTLKSKLGYDDSLDVFGVHAIGGIVGALLTGIFAVESIGG----- 426 Query: 443 YVANAVAPDYSIGGQVWIQFQGVLTTVILSGVVSFIAYKIVDVVIGLRVTEEEEREGLDI 502 A + + + G V + F V+T +IL IV ++GLRVT E E EGLD+ Sbjct: 427 --AQSSFGNQAFGVVVTVVFSAVMTAIILG---------IVSALVGLRVTPEAELEGLDL 475 Query: 503 SSHGE 507 HGE Sbjct: 476 EQHGE 480 >gi|152980791|ref|YP_001354200.1| ammonium transporter [Janthinobacterium sp. Marseille] Length = 400 Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 123/439 (28%), Positives = 188/439 (42%), Gaps = 59/439 (13%) Query: 79 NKGDTAWMLISTAFVILMTLPGLGLFYGGLVRSKNMLSVLMQCFVIFSLIYILWFVYGYS 138 G A ++ A ++L G G VR KN ++ L++ V F++ I +F GYS Sbjct: 5 KHGTDALFIMLGAVMVLAMHAGFAFLELGTVRKKNQVNALVKILVDFAVSTIAYFFVGYS 64 Query: 139 IAFTEGNAFFGGFDRLFLHGLTGDSNTGTFSKGVVIPELSFVAFQGAFAAITVALIIGSF 198 IA+ G +FF + L T G + + F+ FAA A+I G Sbjct: 65 IAY--GTSFFSSAEVL------------TQRNGYELVKFFFLL---TFAAAIPAIISGGI 107 Query: 199 AERVKFSAVILFSILWFTFSYLPMAHMVWFWPGPDAFTDAAAAEKATAISGWL---FQKG 255 AER +F +L + L Y + W + I WL F Sbjct: 108 AERARFHPQLLATALIVGVVYPLFEGIAW--------------NQHFGIQAWLKESFGAN 153 Query: 256 ALDFAGGTVVHINAAIAGLVGSYVIGKRIG-FGKE----AFKPHSLTLTMVGASLLWFGW 310 DFAG VVH L ++G R G + KE A P S+ +GA +L GW Sbjct: 154 FHDFAGSIVVHAVGGWIALPAVLLLGARRGRYTKEGTIAAHPPSSIPFLALGAWILTVGW 213 Query: 311 FGFNAGSALEANGSAALAFVNTILATAAAVLSWSFGEWIGKGKPSMLGAASGAVAGLVAI 370 FGFN SA L VN+++A L+ GK P + +G +AGLVA+ Sbjct: 214 FGFNVMSAQTMEQMNGLVAVNSLMAMVGGTLAAFLA---GKNDPGYV--HNGPLAGLVAV 268 Query: 371 TPAAGFVGVIGAVVMGLIAGLLCLWGVSGLKKILGSDDALDVFGVHGVGGILGALLTGVF 430 + + +GA++ G IAG + +W + + DD L V+ +HG+ G G L G+F Sbjct: 269 CAGSNVMHPLGALITGAIAGFIFVWAFALTQNKWKIDDVLGVWPLHGLCGAWGGLAAGIF 328 Query: 431 AAPSLGGTGIYDYVANAVAPDYSIGGQVWIQFQGVLTTVILSGVVSFIAYKIVDVVIGLR 490 + GG G +++ + I ++ L+G F+ Y + V +G+R Sbjct: 329 GLQAFGGMGGVSFMSQLIGTGLGI-------------SIALAG--GFLIYGALKVTVGIR 373 Query: 491 VTEEEEREGLDISSHGESA 509 + E+E G D+S H SA Sbjct: 374 LDPEQEFNGADLSIHNVSA 392 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,043,356 Number of extensions: 44547 Number of successful extensions: 205 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 194 Number of HSP's successfully gapped: 3 Length of query: 511 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 424 Effective length of database: 899,382 Effective search space: 381337968 Effective search space used: 381337968 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)