BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0097.p
         (112 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981568|ref|YP_001351859.1| nitrogen regulatory protein PII...   204   1e-54
gi|152981593|ref|YP_001352841.1| nitrogen regulatory protein PII...   176   4e-46
gi|152983105|ref|YP_001353460.1| nitrogen regulatory protein PII...    78   1e-16
gi|152981896|ref|YP_001352098.1| nitrogen regulatory protein PII...    64   2e-12

>gi|152981568|ref|YP_001351859.1| nitrogen regulatory protein PII
           [Janthinobacterium sp. Marseille]
          Length = 112

 Score =  204 bits (518), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 104/112 (92%), Positives = 108/112 (96%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK
Sbjct: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60

Query: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           IEAAVDDAIV+R +EAIETAARTGKIGDGKIFV DL  V+RIRTGETGK+AL
Sbjct: 61  IEAAVDDAIVDRVIEAIETAARTGKIGDGKIFVYDLQQVVRIRTGETGKEAL 112


>gi|152981593|ref|YP_001352841.1| nitrogen regulatory protein PII
           [Janthinobacterium sp. Marseille]
          Length = 112

 Score =  176 bits (445), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/112 (79%), Positives = 100/112 (89%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MK +TAIIKPFKLDEVREAL+ +GV G+TVTEVKGFGRQKGHTELYRGAEYVVDFLPK K
Sbjct: 1   MKQVTAIIKPFKLDEVREALAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60

Query: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           +EA VDDA VE+A++AI  AARTGKIGDGKIFVQ +  VIRIRTGETG +A+
Sbjct: 61  VEAVVDDAGVEQAVDAIIKAARTGKIGDGKIFVQAVEQVIRIRTGETGAEAV 112


>gi|152983105|ref|YP_001353460.1| nitrogen regulatory protein PII
           [Janthinobacterium sp. Marseille]
          Length = 113

 Score = 78.2 bits (191), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 1/113 (0%)

Query: 1   MKLITAIIKPFKLDEVREALSAIG-VQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKT 59
           MK I AII+P +LD V  AL ++  + G T+ +V+G  R +G   L+   E+  D    T
Sbjct: 1   MKQIIAIIQPHRLDAVEHALQSLSHLPGFTLFQVRGHARGRGVGHLFAADEWNPDMHEHT 60

Query: 60  KIEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
            +     D I +  +EAI +A+ TG  GDG I V  + D++RI++GE G  AL
Sbjct: 61  ALLMFCSDDIAQEVVEAIRSASHTGNTGDGLIAVSTVDDIVRIQSGERGNAAL 113


>gi|152981896|ref|YP_001352098.1| nitrogen regulatory protein PII
           [Janthinobacterium sp. Marseille]
          Length = 107

 Score = 64.3 bits (155), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 4/103 (3%)

Query: 1   MKLITAIIKPFKLDEVREALSAI-GVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKT 59
           MK I AII+P +LD+VREAL  + G  G+T+T V+G      H + +   E ++D+ PK 
Sbjct: 1   MKEIKAIIRPVRLDDVREALGQVAGFPGMTITHVEGCSSPARH-QPHDFKEELLDYSPKV 59

Query: 60  KIEAAVDDAIVERALEAIETAARTGKIGDGKIFVQ--DLLDVI 100
           +I+  +DD   +   + I+  A T  +GDG +++   D  D I
Sbjct: 60  RIDIVIDDQYAKAVYDTIKRVASTKHVGDGIVWMNTIDQFDYI 102


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.139    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 252,756
Number of extensions: 9491
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 4
Length of query: 112
Length of database: 1,221,021
Length adjustment: 71
Effective length of query: 41
Effective length of database: 958,534
Effective search space: 39299894
Effective search space used: 39299894
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)