BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0096.p
         (259 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982651|ref|YP_001353493.1| hypothetical protein mma_1803 [...   284   3e-78
gi|152982722|ref|YP_001351858.1| hypothetical protein mma_0168 [...   179   1e-46

>gi|152982651|ref|YP_001353493.1| hypothetical protein mma_1803
           [Janthinobacterium sp. Marseille]
          Length = 269

 Score =  284 bits (727), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 146/264 (55%), Positives = 186/264 (70%), Gaps = 19/264 (7%)

Query: 1   MKKLILATAIAASFVSTVARAEDAKPDNELTFNAAVVNDYRYRGLTQTRFDPALQVGADY 60
           MK+LIL  AIAA+F +++A AED+KPDNE++FNAAVV+DYRYRG++QTR  PALQ GADY
Sbjct: 20  MKQLILVVAIAAAFTASIAHAEDSKPDNEISFNAAVVSDYRYRGISQTRLQPALQGGADY 79

Query: 61  THNPTGLYAGTWLTNIKWIKDAGTLAGTDTKGDVEWDIYGGKRGDIGGGFTYDVGGLAYY 120
            HNP+G YAGTWL+ IKW+KD G        GDVE D+YGGKRG++G   TYD+G L Y 
Sbjct: 80  VHNPSGFYAGTWLSTIKWVKDGG------GSGDVEVDVYGGKRGELGKNVTYDLGVLTYV 133

Query: 121 YPGNTLDKVAKNANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIETYY 180
           YP N L+    NANT E+YGQ+GYGP Y KYS S+TNLFG  +SK S Y D+GAN++   
Sbjct: 134 YPSNGLN---PNANTTEVYGQLGYGPAYIKYSHSVTNLFGFVDSKNSGYLDIGANLDISN 190

Query: 181 GVILGLHVGHQNVRGN-----PNQLSYTDWKIGLSKTFDQAAGITLGLAYVGTDLKDGVS 235
           G IL LH GHQ V G+      ++LSYTDWK+G+SK F    G    LAY+GTD      
Sbjct: 191 GYILNLHAGHQKVAGDNAGVSNDRLSYTDWKVGVSKDFGLFTG---ALAYIGTDADKSAY 247

Query: 236 TTPASDGFKNVGKNGFVVSLSKTF 259
            +P +  F  +GK+  ++++SKTF
Sbjct: 248 ASPVNGKF--MGKDALILTISKTF 269


>gi|152982722|ref|YP_001351858.1| hypothetical protein mma_0168
           [Janthinobacterium sp. Marseille]
          Length = 246

 Score =  179 bits (454), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/260 (43%), Positives = 153/260 (58%), Gaps = 15/260 (5%)

Query: 1   MKKLILATAIAASFVSTVARAEDAKPDNELTFNAAVVNDYRYRGLTQTRFDPALQVGADY 60
           MKKLI+A A+  +F  ++A AED  P++  T N +VV+DYR+RG++QT   PA+Q G DY
Sbjct: 1   MKKLIIAVAVMGAFAGSLAHAEDVIPEHSFTGNLSVVSDYRFRGISQTFKQPAVQGGFDY 60

Query: 61  THNPTGLYAGTWLTNIKWIKDAGTLAGTDTKGDVEWDIYGGKRGDIGGGFTYDVGGLAYY 120
            H+ +G Y G W +N+           + T G +E D+YGG + +I    T DVG L YY
Sbjct: 61  AHS-SGFYVGNWNSNVS--------GNSFTDGSIEMDLYGGYKFNITPDVTADVGVLYYY 111

Query: 121 YPGNTLDKVAKNANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIETYY 180
           YPG  +    K  NT ELYG +GY     KYS ++++ FGA +S  S Y +L AN E   
Sbjct: 112 YPGAQILG-GKKYNTTELYGSIGYKWFTLKYSNAVSDFFGAPDSNGSDYIELNANFEVMD 170

Query: 181 GVILGLHVGHQNVRGNPNQLSYTDWKIGLSKTFDQAAGITLGLAYVGTDLKDGV-STTPA 239
              LG HVGHQ V+ N +  SYTD+K+ L++ F  A   T+GLA VGTD   G  S T A
Sbjct: 171 KTTLGFHVGHQKVK-NVDNASYTDYKLSLARDFGFA---TIGLAVVGTDADKGFYSLTNA 226

Query: 240 SDGFKNVGKNGFVVSLSKTF 259
           +   K +G    V+S+SK F
Sbjct: 227 AGKTKKLGDTTAVLSISKAF 246


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 654,596
Number of extensions: 28190
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 178
Effective length of database: 921,564
Effective search space: 164038392
Effective search space used: 164038392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)