BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0087.p
         (175 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982770|ref|YP_001351850.1| hypothetical protein mma_0160 [...   151   2e-38

>gi|152982770|ref|YP_001351850.1| hypothetical protein mma_0160
           [Janthinobacterium sp. Marseille]
          Length = 181

 Score =  151 bits (381), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 115/183 (62%), Gaps = 17/183 (9%)

Query: 4   LRPAM-----LCLSLACLCLAACSPRYNWRQASDNGAHFMVLLPAKPASVTRPIDLDGPR 58
           ++PA+     + L  A   L+ACSP+++WR+   N A + V +P+KP ++TR IDL+G +
Sbjct: 1   MKPALRSFFNIALLGAAFTLSACSPKFDWREIRSNDAPYAVAMPSKPTTLTRQIDLNGTQ 60

Query: 59  VDMSMTAAEVDGLTFAVGSAELPDAAAAMRALETMRTALLNNIAGQPQGTPTWP------ 112
           V M+MTA+ VDG+TFAVGSAELPDA  A  +L  M+TAL+NNI G  +   T        
Sbjct: 61  VAMTMTASSVDGITFAVGSAELPDATLAQVSLSAMKTALVNNIGGTIKQEKTLTMAQGSA 120

Query: 113 -GQTTVFARTIDLDARGLSRGRPLR-LVARLAVRERRVYQILIVGDEKAFKEENIETFFS 170
            GQ  V    +++ A G +   P R L AR   +++RVYQ+++ G EK  K E ++TFFS
Sbjct: 121 GGQLAV----MEMQALGAASNEPARVLFARFVAQDKRVYQLVVTGSEKVVKRELVDTFFS 176

Query: 171 SFK 173
           SFK
Sbjct: 177 SFK 179


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 266,639
Number of extensions: 7696
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 98
Effective length of database: 936,352
Effective search space: 91762496
Effective search space used: 91762496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)