BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0083.p (759 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981064|ref|YP_001351846.1| two component sensor histidine ... 967 0.0 gi|152982333|ref|YP_001354112.1| two-component sensor histidine ... 80 3e-16 gi|152980591|ref|YP_001354672.1| two-component system sensor kin... 79 1e-15 gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcr... 70 3e-13 gi|152980593|ref|YP_001352770.1| nitrogen regulation (sensor pro... 70 3e-13 >gi|152981064|ref|YP_001351846.1| two component sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 763 Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust. Identities = 514/771 (66%), Positives = 618/771 (80%), Gaps = 25/771 (3%) Query: 1 MSRTLRYLLVVGGGVISILLFLLASASENSALFEQHYPWLLFLNGLAAISLLGLVLLLLG 60 M+R LRYLLVVGG V+SILLFLLASASENS LFEQ+YPWLL LN + A +LL LV LLL Sbjct: 1 MTRLLRYLLVVGGAVVSILLFLLASASENSNLFEQNYPWLLILNAVVAGALLLLVTLLLV 60 Query: 61 RLYKRYRRGKFGSKLLARLVLMFALVGIVPGAVIYLMSVQFVSRSIESWFDVRMEAALES 120 RLYKRY+RGKFGS+L+ARLVL+FA++GI+PGAVIY +SVQFVSRSIESWFDVR+E+ALES Sbjct: 61 RLYKRYKRGKFGSRLMARLVLLFAVIGILPGAVIYTVSVQFVSRSIESWFDVRVESALES 120 Query: 121 GLNLGRNALDSSLSDLVSRARGMAQELSDMSDSEQVTYLSRQRDQNM--EITIVNANGQV 178 GLNLGR ALDSSL+DL ++AR MA ELSD+SD+ Q+T LSR RDQN+ E IV +NGQ+ Sbjct: 121 GLNLGRAALDSSLNDLQTKARNMALELSDLSDAMQITQLSRMRDQNLQQEAVIVTSNGQM 180 Query: 179 MGTVGGSIGSLTPTLPSPQATRQARVSRAFSAVE-----SDDTRPPNGES----DSDGNL 229 + + G + SL P LP+ RQARV+R+++ +E DD++ + + ++ ++ Sbjct: 181 IASSGSQLSSLLPDLPTAAMLRQARVARSYATIEGNNEFQDDSKKSSTNTTPVTNTANSM 240 Query: 230 RLHVVVLIPAPSRGMSLQNETRYLQILQPVPDYLASNAETLRLAYNEYQQRSVSRSGLRK 289 L VVV IP S+ + LQ ++RYLQ+ QPVP+ LA+NAE LR+AY+EYQ+R ++R+GLRK Sbjct: 241 YLRVVVEIPTSSKALLLQTDSRYLQLRQPVPEQLATNAEALRVAYSEYQERYLARTGLRK 300 Query: 290 IYLVTLTLTLLLAIFAAIASAFLIASDLAKPLLLLAEGTKAVAEGNLSPRPIVSTSDELG 349 IY+VTLTLTLLLAIF AIA AFLIASDLAKPLLLLAEGTKAVAEGNLSPRPIV+TSDELG Sbjct: 301 IYIVTLTLTLLLAIFGAIAGAFLIASDLAKPLLLLAEGTKAVAEGNLSPRPIVATSDELG 360 Query: 350 TLTQSFNTMTRQLLEARTSVEKNRAELENAKAYLESVLANMSAGVMVLDGHFNIVSANDS 409 TLTQSFNTMTRQL +AR SVEKNR ELENAK YLESVLANMSAGVMVLD +F +V+ N+S Sbjct: 361 TLTQSFNTMTRQLFDARASVEKNRFELENAKGYLESVLANMSAGVMVLDRNFKLVTCNES 420 Query: 410 VRRILGYDFSANIGTPLQTIDSQAPFAQAIIRAFSEQLAQHSSD--GADGLHWQRQFELS 467 V RIL +DF+ +IG PL+ ID + FAQ I ++FSEQ AQ ++ G + LHWQ Q ++ Sbjct: 421 VERILQHDFAQHIGKPLKDIDGLSTFAQVITQSFSEQSAQSAAGRAGKESLHWQHQIDVP 480 Query: 468 RQPGAVLEANDEQGGKPDHDKLTLLARGSHLPVENGVGYVVVFDDISNVISAQRSIAWGE 527 R+ GG + ++LLARGS LP YVVVFDDIS+VISAQRSIAWGE Sbjct: 481 RR----------MGGPETENDISLLARGSRLPGAREGSYVVVFDDISDVISAQRSIAWGE 530 Query: 528 VARRLAHEIKNPLTPIQLSAERLQHRLADKLMPADAAILDKGTTTIVNQVTAMKRMVDDF 587 VARRLAHEIKNPLTPIQLSAERL +L KL ADA +L++ T TIVNQVTAMKRMVDDF Sbjct: 531 VARRLAHEIKNPLTPIQLSAERLHMKLEGKLNEADAKVLERSTETIVNQVTAMKRMVDDF 590 Query: 588 RDYAKTPPAKPVALDLNALIEEILNLYLAGDGRDVIHARLAPEMSKVMGDATQMRQVIHN 647 RDYAKTPPA +LDLNALIEEIL+LYL+GDGRD+IHA LA ++ +MGD TQ+RQVIHN Sbjct: 591 RDYAKTPPAVLSSLDLNALIEEILHLYLSGDGRDIIHATLAQDLPLIMGDPTQLRQVIHN 650 Query: 648 LLQNAQDAVTDDGHQA--PRIDVLTEQIDIAGTNGQRQPAVRLSIMDNGPGFSPTILARA 705 LLQNAQDAV D G QA RID++TE+I ++G AV+L+I DNGPGF+P ILA A Sbjct: 651 LLQNAQDAVADRGEQAAPARIDIITEEIHYRSSDGAVSNAVQLTITDNGPGFTPKILAHA 710 Query: 706 FEPYVTSKARGTGLGLAMVKKIVEEHGGRIDIQNRTDGRGAKIVILLVKLA 756 FEPY+TSK RGTGLGLAMVKKI+EEHGGRIDIQNR+D GAK+ ILL+KL+ Sbjct: 711 FEPYITSKPRGTGLGLAMVKKIIEEHGGRIDIQNRSDTNGAKVAILLLKLS 761 >gi|152982333|ref|YP_001354112.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 587 Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 114/247 (46%), Gaps = 53/247 (21%) Query: 526 GEVARRLAHEIKNPLTPIQLSAERLQHRLADKLMPADAAILDKGTTTIVNQVT----AMK 581 GE+ + HEI PL I L ADAA T ++NQ + ++ Sbjct: 361 GELTASIVHEINQPLGAI--------------LANADAA------TMMLNQQSHPDHELR 400 Query: 582 RMVDDFRD----------------YAKTPPAKPVALDLNALIEEILNLY--LAGDGRDVI 623 ++ D RD ++ +KPV+L N +I+ +L LA ++ Sbjct: 401 AILADIRDDNLRASLIIQKLRVLLSKRSLESKPVSL--NEVIDTSRSLLGNLAIKHHVMM 458 Query: 624 HARLAPEMSKVMGDATQMRQVIHNLLQNAQDAVTDDGHQAPRIDVLTEQIDIAGTNGQRQ 683 LAP++ +MGD+T ++QV+ NL NA +A+ + + TEQ + + Sbjct: 459 AIELAPDLPMIMGDSTHLQQVLINLASNAMEAMEAVPPAQRTLSIKTEQCNASH------ 512 Query: 684 PAVRLSIMDNGPGFSPTILARAFEPYVTSKARGTGLGLAMVKKIVEEHGGRIDIQNRTDG 743 +RL + D GPG IL FE + T+K G G+GLA+V+ IV+ H G I+ N G Sbjct: 513 --IRLIVADKGPGIPTNILPNIFESFYTTKPEGMGMGLAIVQTIVDAHCGLIETFNDPAG 570 Query: 744 RGAKIVI 750 GA VI Sbjct: 571 -GAAFVI 576 >gi|152980591|ref|YP_001354672.1| two-component system sensor kinase [Janthinobacterium sp. Marseille] Length = 566 Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 114/478 (23%), Positives = 205/478 (42%), Gaps = 52/478 (10%) Query: 284 RSGLRKIYLVTLTLTLLLAIFAAIASAFLIASDLAKPLLLLAE-GTKAVAE-GNLSPRPI 341 +SGL +YL L AI A + A S A L+LLAE G + + E ++S + Sbjct: 102 KSGLAILYLFPLAGG---AILAPLVLALFFVS--AVTLMLLAENGYQLLNENADISSSQV 156 Query: 342 VSTSDELGTLTQSFNTMTRQLLEARTSVEKNRAELENAKAYLESVLANMSAGVMVLDGHF 401 + + N + +L++ T L +A V+A+M G++V+D Sbjct: 157 GLYGAAFFIIIFAINRLAARLIKQETLARGRGRALHVQQAINRLVIADMEDGILVVDRKG 216 Query: 402 NIVSANDSVRRILGYDF-SANIGTPLQTIDSQAPFAQAIIRAFSEQLAQHSSDGADGLHW 460 +++ N + R+LG F A L + AP A A A+ + Sbjct: 217 RVLTCNPAAARMLGLSFPHAGDYGKLSDMVWLAPIAAAY-SAWGARSGLRVPTQPQTQQQ 275 Query: 461 QRQFELSRQPGAVLEANDEQGGKP---------DHDKLTLLARGSHLPVENGVGYVVVFD 511 F + E N QGG H KL + +E+ V V+ Sbjct: 276 TPTFVFIKHT----EENTLQGGSTIMGGRRELMTHLKLRFARVDADGVLEDRV--VIFLQ 329 Query: 512 DISNVISAQRSI---AWGEVARRLAHEIKNPLTPIQLSAERLQHRLADKLMPADAAILDK 568 D++ + + + + + G + +AHE++NPL+ I + L+ D+L +L Sbjct: 330 DVTEIENQAQQLKLASMGRLTASIAHEVRNPLSAIGHATSLLKE---DELSAGQQRLL-- 384 Query: 569 GTTTIVNQVTAMKRMVDDFRDYAKTPPA--KPVALDL--NALIEEILNLYLAGDGRDVIH 624 + + + V + RM++D ++ +P++L L + L+ E+ ++ DG + Sbjct: 385 --SIVSDNVARLNRMIEDILKLSRKAHQYHEPLSLGLLFDDLLSELSEIHEIKDGMIAV- 441 Query: 625 ARLAPEMSKVMGDATQMRQVIHNLLQNAQDAVTDDGHQAPRIDVLTEQIDIAGTNGQRQP 684 A + P KV D +R+++ NLL NA + AP + ++ I G R Sbjct: 442 ADMKP--YKVRFDPLHLREIVLNLLTNALRYASG----APA----SIRVYIVAMPGHR-- 489 Query: 685 AVRLSIMDNGPGFSPTILARAFEPYVTSKARGTGLGLAMVKKIVEEHGGRIDIQNRTD 742 + L + D+G S + A FEP+ T+ +GTGLGL + +++ +G ++ + RTD Sbjct: 490 -LELHVQDDGAQISSAVRAHLFEPFYTTSNKGTGLGLYLARELCLNNGAMLNYEYRTD 546 >gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 544 Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 28/233 (12%) Query: 533 AHEIKNPLTPIQLSAERLQHRLADKLMPADA----AILDKGTTTIVNQVTAMKRMVDDFR 588 AH++K PL +++ +E L R D++ + A K T ++NQ+ A+ R + Sbjct: 315 AHQMKTPLAGMRMQSE-LALRQTDQVEIHKSLEQLAKSSKSATRMINQLLALARAEN--- 370 Query: 589 DYAKTPPAKPV-ALDLNALIEEILNLYLAGDGRDVIHARLAPEMSKVM--GDATQMRQVI 645 +TP +P+ L+L+ L + + ++ I +M GDA +R+++ Sbjct: 371 ---QTPTTRPLQPLELSELARDTVQEWVQTSFNKKIDLGFEQPDYHIMVNGDAIMLRELL 427 Query: 646 HNLLQNAQDAVTDDGHQAPRIDVLTEQIDIAGTNGQRQPAVRLSIMDNGPGFSPTILARA 705 +NL+ NA + GH R+ E+ +A L + D GPG +P R Sbjct: 428 NNLIDNALNYTPAGGHATVRVRA-DEEARLA----------YLEVEDTGPGIAPHEHKRI 476 Query: 706 FEPY---VTSKARGTGLGLAMVKKIVEEHGGRIDIQNRTDGRGAKIVILLVKL 755 FE + + S G+GLGLA+V++I ++HG IDI N + K L+++ Sbjct: 477 FERFYRILGSNVEGSGLGLAIVREIAQQHGAEIDILNNPNCTNPKAPGCLMRI 529 >gi|152980593|ref|YP_001352770.1| nitrogen regulation (sensor protein kinase) transcription regulator [Janthinobacterium sp. Marseille] Length = 345 Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 116/240 (48%), Gaps = 18/240 (7%) Query: 521 RSIAWGEVARRLAHEIKNPLTPIQLSAERLQHRLADKLMPADAAILDKGTTTIVNQVTAM 580 +S A E+ R LAHEIKNPL I+ +A+ L+ L ++ + + T I+ + + Sbjct: 115 QSQANKELIRNLAHEIKNPLGGIRGAAQLLEMELPERHLKE----FREYTQVIIKEADRL 170 Query: 581 KRMVDDFRDYAKTPPAKPVALDLN--ALIEEILNLYLAGDGRDV-IHARLAPEMSKVMGD 637 + +VD ++P + D+N + E + +L ++ + I + + GD Sbjct: 171 QTLVDRLLAPHRSPH---IVGDVNIHEVCERVRSLIVSEFPNGLKIKRDYDLSVPEFRGD 227 Query: 638 ATQMRQVIHNLLQNAQDAVT-----DDGHQAPRIDVLTEQIDIAGTNGQRQPAVRLSIMD 692 Q+ Q + N+ NA ++ D R + Q+ +A + + A+ L I+D Sbjct: 228 KEQLIQAVLNIAHNAAQVLSARMKAGDAELTLRTRI-ARQVTLAKV--RYRLALDLHIID 284 Query: 693 NGPGFSPTILARAFEPYVTSKARGTGLGLAMVKKIVEEHGGRIDIQNRTDGRGAKIVILL 752 NGPG P I R F P V+ + G+GLGL + + V++H G I+ ++R +I+I L Sbjct: 285 NGPGIPPDIRDRIFYPLVSGRDGGSGLGLTLAQTFVQQHMGLIECESRPGCTDFRILIPL 344 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,596,132 Number of extensions: 64735 Number of successful extensions: 341 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 330 Number of HSP's successfully gapped: 14 Length of query: 759 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 669 Effective length of database: 888,291 Effective search space: 594266679 Effective search space used: 594266679 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)