BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0082.p (248 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982572|ref|YP_001351845.1| two-components system response ... 341 2e-95 gi|152981322|ref|YP_001355016.1| two components system response ... 75 4e-15 gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(... 67 1e-12 gi|152979868|ref|YP_001354671.1| two-components system response ... 66 2e-12 gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding respons... 65 6e-12 >gi|152982572|ref|YP_001351845.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 238 Score = 341 bits (875), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 183/251 (72%), Positives = 200/251 (79%), Gaps = 20/251 (7%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEILGDEGHVV TAENAQQARELR A PDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILGDEGHVVATAENAQQARELRAAAKPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDG+LTMPVIMMSGHATIDTAVEATRIGALNFLEKPI+LQKLLKAVQQGL+ Sbjct: 61 VTLLKEWQRDGMLTMPVIMMSGHATIDTAVEATRIGALNFLEKPISLQKLLKAVQQGLTR 120 Query: 121 SREAVRPASYRP-APVAAVANGATDGLHV--EHVTPATT--YAPALGGEALHQGAPAAAP 175 +E R AS AP+A ATD H+ + V PA++ PA+ A+AP Sbjct: 121 GQEVTRIASMPVRAPIA-----ATDSHHLPQDKVLPASSSQMYPAI----------ASAP 165 Query: 176 FGQVADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQ 235 SF+LPLREARDAFERAYFE+HL +E GSMTRVAE+TGLERTHLYRKLKQ Sbjct: 166 LMSADTQFFTASFELPLREARDAFERAYFEHHLGQEGGSMTRVAEKTGLERTHLYRKLKQ 225 Query: 236 LGVEPGKLARK 246 LGVEPGK+A+K Sbjct: 226 LGVEPGKIAKK 236 >gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 75.1 bits (183), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 69/120 (57%) Query: 3 NILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDGVT 62 +IL+VDD+ IRELL+ L G + A N +Q R + + G DL++LD+ +P DG+T Sbjct: 6 HILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLT 65 Query: 63 LLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSHSR 122 L +E + T+PV+M++ + +GA ++L KP A+++L ++ L +R Sbjct: 66 LCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRAR 125 >gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 66.6 bits (161), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 20/205 (9%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 M I +VDD+ IR +L + L E + NA+ A E + G P +++ DI MP G Sbjct: 1 MKPIWIVDDDESIRWVLEKALARENLATKSFSNARDALEALKTGAPQVLVSDIRMPGESG 60 Query: 61 VTLLK--EWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGL 118 + LL+ + + GL PVI+++ + +D+AV A + GA +L KP + + +++ L Sbjct: 61 LELLQAVKAKHPGL---PVIIITAFSDLDSAVAAFQGGAFEYLAKPFDIDHAVGLIRRAL 117 Query: 119 SHS-RE-------AVRPASYRPAPVAAVANGATDGLHVEHVTPATTYAPALGGE----AL 166 S RE A P AP A L +VT T G E AL Sbjct: 118 EESLRETSVEQVSAETPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARAL 177 Query: 167 HQGAP-AAAPFGQVADNAANISFDL 190 H+ +P A+ PF +A N A I DL Sbjct: 178 HKHSPRASQPF--IALNTAAIPKDL 200 >gi|152979868|ref|YP_001354671.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 471 Score = 66.2 bits (160), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 1/126 (0%) Query: 4 ILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDGVTL 63 IL+VDDE +RELL L G + +A+N AR+ Q LVL D+ +PD G+ L Sbjct: 6 ILIVDDEADLRELLEITLVKMGLDIDSAQNLAVARDYLQQHEYALVLTDMRLPDGLGIEL 65 Query: 64 LKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSHSRE 123 ++E T PV +++ + D AV A + GA ++L KP+ L++L V+ L S+ Sbjct: 66 VQEITAQYKNT-PVAVITAFGSADNAVVALKAGAFDYLSKPVGLEQLRVMVRSALRISQA 124 Query: 124 AVRPAS 129 +P++ Sbjct: 125 DEQPSA 130 >gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 215 Score = 64.7 bits (156), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 13/152 (8%) Query: 4 ILVVDDEMGIRELLSEILGDEGHVVTT--AENAQQARELRQAGVPDLVLLDIWMPDTDGV 61 +L+ DD +RE L +IL D +V AEN +A +L + G ++LLDI MPD G+ Sbjct: 9 VLIADDHAIVREGLKQILADTKDIVVAGHAENGIEAIKLSREGACQVLLLDISMPDRSGI 68 Query: 62 TLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSHS 121 +LK+ +++ + V+M+S H A+ + + GA +L K A +L+ A++Q Sbjct: 69 EVLKQVKKES-PKIAVLMLSMHREDQYAIRSLKAGASGYLNKQSAPAELVNAIRQ----- 122 Query: 122 REAVRPASYRPAPVAAVANGATDGLHVEHVTP 153 A+ R AA+A + + +H TP Sbjct: 123 -----VAAGRKYISAALAQELANQISDDHETP 149 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 613,514 Number of extensions: 27107 Number of successful extensions: 213 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 214 Number of HSP's successfully gapped: 22 Length of query: 248 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 167 Effective length of database: 921,564 Effective search space: 153901188 Effective search space used: 153901188 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)