BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0079.p
         (243 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982008|ref|YP_001351842.1| tRNA (guanine-N7-)-methyltransf...   294   3e-81
gi|152981154|ref|YP_001354618.1| tRNA (guanine-N7-)-methyltransf...    59   3e-10

>gi|152982008|ref|YP_001351842.1| tRNA
           (guanine-N7-)-methyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 224

 Score =  294 bits (753), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 142/223 (63%), Positives = 167/223 (74%), Gaps = 2/223 (0%)

Query: 15  FFVNSSPIRSAQTGVHDQLSALVARHAHPAHPFRKPVTDYNLRAFEASMAAWGAAGEPPL 74
            + NS  I S QT  H QL A V RHA   HPF+KP+T YN  AFE S+A+W AAG  PL
Sbjct: 1   MYANSHFIVSRQTDTHAQLHAQVERHA--KHPFQKPITAYNRSAFEHSIASWQAAGGKPL 58

Query: 75  ILDTGCGVGLSTLHLAAQYPDHFVIGIDQSADRLARHTHWDGPEPDNLCFVRADLVDYWR 134
           ILD GCGVGLST +LA Q+PDHFVIG+DQSADR+AR+T W    P N   VRADLVDYWR
Sbjct: 59  ILDAGCGVGLSTFNLATQFPDHFVIGVDQSADRIARNTQWPHAVPGNCLRVRADLVDYWR 118

Query: 135 LAQQAGLRPAQHYLLYPNPWPKIGHLARRWHGHAVFPFILSLGGRLECRSNWRIYVEEFT 194
           L   + +RPA+HY+LYPNPWPKIGHL RRWHGHA+FP I++LGG LECRSNW+IY+EEF 
Sbjct: 119 LLLASDIRPARHYILYPNPWPKIGHLTRRWHGHAIFPTIVALGGTLECRSNWQIYIEEFA 178

Query: 195 SALNQLTGRSIQAEPWLPATPITPFERKYLASGHALWRCVVDL 237
           +AL  LT + +  E + P   ITPFE+KYLASGH LWRC  +L
Sbjct: 179 AALQLLTQQQVACEAYTPQHCITPFEQKYLASGHGLWRCRTEL 221


>gi|152981154|ref|YP_001354618.1| tRNA
           (guanine-N7-)-methyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 238

 Score = 58.9 bits (141), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 73  PLILDTGCGVGLSTLHLAAQYPDHFVIGIDQSADRLARHTHWDGPEP-DNLCFVRAD--- 128
           P I + G G+G +T  +AA  P+   IG++     +       G +   NL  ++ D   
Sbjct: 67  PTIFEIGFGMGETTAKIAAGMPEKNFIGVEVHTPGVGSLLKLIGEQGLSNLRIIQHDAFE 126

Query: 129 -LVDYWRLAQQAGLRPAQHYLLYPNPWPKIGHLARRWHGHAVFPFI---LSLGGRLECRS 184
            L +       AG+     ++ +P+PW K  H  RR     +   +   +  GG L C +
Sbjct: 127 VLTNMIEPESLAGV-----HVFFPDPWHKARHNKRRLIQPPLVALLSSRIKKGGYLHCAT 181

Query: 185 NWRIYVEEFTSALNQLTGRSIQAEPWLPA---TPITPFERKYLASGHALWRCVVD 236
           +W+ Y E+    L         AE + P     P+T FE + L  GH +W  V +
Sbjct: 182 DWQEYAEQMLEVLGGEPSLQNTAEGYAPRPDYRPVTKFENRGLKLGHGVWDLVFE 236


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.138    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 644,708
Number of extensions: 27369
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 243
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 162
Effective length of database: 921,564
Effective search space: 149293368
Effective search space used: 149293368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)