BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0078.p
         (281 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982128|ref|YP_001352094.1| transporter of the DMT superfam...   348   3e-97
gi|152982626|ref|YP_001354130.1| transporter of the DMT superfam...   117   1e-27

>gi|152982128|ref|YP_001352094.1| transporter of the DMT superfamily
           [Janthinobacterium sp. Marseille]
          Length = 298

 Score =  348 bits (892), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 191/280 (68%), Positives = 228/280 (81%), Gaps = 3/280 (1%)

Query: 1   MNLAVIALVLTAALLHASWNALLKSSHDRLASLSLMTLGAGLGAIPLLLWRPLPHIDSWC 60
           M++ V++LVL AALLHASWNALLKSS D L +L++MT+G+GL A+PL+L+ PLP  +SW 
Sbjct: 21  MSIFVLSLVLFAALLHASWNALLKSSADPLGALAVMTIGSGLAALPLILYLPLPLPESWP 80

Query: 61  YILLSGLLHTGYNLFLIRAYRIGDFGQSYPIARGSSPLLVALGAALFAGEQLGIYTVIGI 120
           YI LS +LHT YNLFLIRAYRIGDF QSYPIARGSSPLLV LGAAL  GEQ+   T++G+
Sbjct: 81  YIALSAVLHTAYNLFLIRAYRIGDFSQSYPIARGSSPLLVTLGAALLVGEQMSWMTLLGV 140

Query: 121 TLVSVGIVSLADLRAMRRREHLSAPLAALATGAFIAAYTITDGIGARLAGDAIAYAGWLF 180
            L+SVGI+SLA ++    R HL+ P+AA  TGAFIAAYTITDG+GAR+AG A++Y GWLF
Sbjct: 141 ILISVGIISLAHIK---NRLHLAGPIAAFTTGAFIAAYTITDGLGARVAGSALSYCGWLF 197

Query: 181 LADSFALAVIYHCQHGRSPVVLSHKETWIGLGGGLMSLLAYGIVIWAVTLAPMGMVSALR 240
           + DS  L +IY   H R P+    KETW+ LGGGLMSLLAYGIVIWAVTLAPMG VSALR
Sbjct: 198 VLDSVPLLLIYLRLHKRLPMAFGSKETWVALGGGLMSLLAYGIVIWAVTLAPMGTVSALR 257

Query: 241 ETSVLFALLIGTLFLGEKLTLRRVLSCLVIAAGAIVLGAH 280
           ETSVLFA LIG LFLGEKL++RR+LSCL+I  GAI+LG H
Sbjct: 258 ETSVLFAALIGWLFLGEKLSMRRILSCLLITVGAIILGLH 297


>gi|152982626|ref|YP_001354130.1| transporter of the DMT superfamily
           [Janthinobacterium sp. Marseille]
          Length = 293

 Score =  117 bits (292), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 148/297 (49%), Gaps = 27/297 (9%)

Query: 1   MNLAVIALVLTAALLHASWNALLKSSHDRLASLSLMTLGAGLGAIPL---LLWRPLPHI- 56
           M+ + +AL++TA  +HA WN + K +          +L   L   PL   L W  +P   
Sbjct: 1   MSFSALALLITAGFIHAGWNIVAKRAGGDARFALFTSLFLALVWTPLGVSLAWNVVPGWG 60

Query: 57  -DSWCYILLSGLLHTGYNLFLIRAYRIGDFGQSYPIARGSSPLLVALGAALFAGEQLGIY 115
            D W  IL+SG+LH  Y + L+R YR  D    YP+ARGS PLL ++ A +  GE +   
Sbjct: 61  WDEWIVILVSGILHVIYYVVLLRGYRKADLTVVYPLARGSGPLLSSMAALMLLGEHISTL 120

Query: 116 TVIGITLVSVGIVSLADLRAM---------RRREHLSAPLAALATGAFIAAYTITDGIGA 166
            + GI  V +G+  +A    +         R+R H+      L TGAFIA+YT+ DG   
Sbjct: 121 GIAGIAGVVLGVFLIAGGPKLFLAARDPVQRKRVHVGI-FYGLLTGAFIASYTVVDGYAV 179

Query: 167 R---LAGDAIAYAGWLFLADSFALAVIY---HCQHGRSPVVLSHKETWIGLGGGLMSLLA 220
           +   ++   I Y G      +F   VI    + Q   +   L  K+    L  G +S ++
Sbjct: 180 KFMLMSPILIDYMG------NFIRIVILAPTYFQDRATAASLWKKQWKYALIVGAISPVS 233

Query: 221 YGIVIWAVTLAPMGMVSALRETSVLFALLIGTLFLGEKLTLRRVLSCLVIAAGAIVL 277
           Y +V++AV LAP+  V+  RE S+LFA +IG   L E   ++R++  + IA G I L
Sbjct: 234 YVLVLYAVKLAPLSHVAPAREVSMLFAAIIGGHLLKEGDRIQRLIGAIFIAIGVIAL 290


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 532,408
Number of extensions: 19516
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 2
Length of query: 281
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 199
Effective length of database: 917,867
Effective search space: 182655533
Effective search space used: 182655533
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)