BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0077.p (240 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 258 3e-70 gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type tr... 256 1e-69 gi|152980731|ref|YP_001354730.1| phosphonate ABC-type transport ... 145 2e-36 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 145 2e-36 gi|152981146|ref|YP_001354830.1| cell division ATP-binding prote... 138 3e-34 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 258 bits (658), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 123/236 (52%), Positives = 173/236 (73%) Query: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 +I ++ ++K +G +L+GI ++ EV+ +IG SGSGKST LRC+NGLE + +G I + Sbjct: 3 LIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSISV 62 Query: 61 EGVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAEKL 120 G L +++L LR ++GM+FQ+FNLFPH++V N++++PM VK +S + A +A K Sbjct: 63 AGSHLGKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARALAMKN 122 Query: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLSVMK 180 L+KVGL +K D+FP+QLSGGQQQRVAIARAL+MEP+ +L DE TSALDPELV EVL+V++ Sbjct: 123 LEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVLNVVR 182 Query: 181 QLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHERTRDFL 236 LA EGMT+++VTHEM FAREV DRV F+ QG + E G P+ + P + FL Sbjct: 183 GLAHEGMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPELKQFL 238 >gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 256 bits (653), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 123/240 (51%), Positives = 172/240 (71%) Query: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 MI+++++ K +G +L ++ +VV V GPSGSGKST ++ +NGLE G I + Sbjct: 1 MIELDKVSKWYGNFQVLTDCTTQVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQQGKITV 60 Query: 61 EGVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAEKL 120 +G+ + DPK +L++LR+ +GMVFQ F LFPH+++ ENL +A ++V K S A K Sbjct: 61 DGISVGDPKTNLSSLRSRIGMVFQNFELFPHLSISENLTLAQVKVLKRSLPDATERGLKY 120 Query: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLSVMK 180 L +VGL+ D FP QLSGGQQQRVAIARAL+M+P MLFDEPTSALDPE++ EVL VM Sbjct: 121 LDRVGLIAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 181 QLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHERTRDFLRKVL 240 LA+EGMTM+VVTHEMGFA++V++RV F+D+G+I+E+ + G +R RDFL K++ Sbjct: 181 GLAQEGMTMMVVTHEMGFAKKVANRVIFMDKGLIVEDCTKDEFFGTTRSDRARDFLAKII 240 >gi|152980731|ref|YP_001354730.1| phosphonate ABC-type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 262 Score = 145 bits (367), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 130/227 (57%), Gaps = 7/227 (3%) Query: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 MI++N + R+G + LR ++ + ++G SG+GKST LRC+N + + S G I + Sbjct: 1 MIQLNDVSVRYGDTYALRSTSLKLHKGQFTVLLGASGAGKSTLLRCINMMCQPSAGTIDV 60 Query: 61 EGVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAE-- 118 G+ L + L A R + GMVFQ+ L T L+N++M + R L E Sbjct: 61 VGLGLLQNRRVLQAHRRQTGMVFQQHQLIARRTALQNVLMGRLGYHTTLRSLFPLSQEEQ 120 Query: 119 ----KLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGE 174 + L +VGLL K +QLSGGQQQRV IARAL +PK++L DEP ++LDP + Sbjct: 121 RIGLRALDRVGLLHKALTRVDQLSGGQQQRVGIARALTQQPKLILADEPVASLDPATSEK 180 Query: 175 VLSVMKQLA-EEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPP 220 VL +++Q+ E+G++ VV H++ A + SDR+ + G +M + P Sbjct: 181 VLEILRQICKEDGISAVVSLHQVDLALKYSDRIVGLAHGKVMFDAVP 227 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 145 bits (366), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 139/243 (57%), Gaps = 10/243 (4%) Query: 2 IKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFIE 61 I+V +QK+FG L + + A E+ ++GPSG GK+T LR + GLE+ G + ++ Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 62 GVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRR----QAVLVA 117 G + V ++G VFQ + LF HMTV EN+ ++V+ + R Q Sbjct: 63 GEDASARHVR----ERQVGFVFQHYALFKHMTVFENIAFG-LRVRPAATRPSESQIKEKV 117 Query: 118 EKLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLS 177 KLL+ V L D +P QLSGGQ+QR+A+ARALA+EP+V+L DEP ALD ++ E+ Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 178 VMKQLAEE-GMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHERTRDFL 236 +++L ++ +T + VTH+ A EV+D++ +++G + + G P+ V P FL Sbjct: 178 WLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFL 237 Query: 237 RKV 239 V Sbjct: 238 GNV 240 >gi|152981146|ref|YP_001354830.1| cell division ATP-binding protein FtsE [Janthinobacterium sp. Marseille] Length = 227 Score = 138 bits (347), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 125/219 (57%), Gaps = 4/219 (1%) Query: 1 MIKVNQLQKRFGQ-AHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIF 59 MI+ +Q+ K++ Q L I + E+V + GPSG+GKST L+ + +E S+G + Sbjct: 1 MIEFHQVSKKYTQNVTALSDISLSVGKGELVFLAGPSGAGKSTLLKLIAAMERPSEGSVI 60 Query: 60 IEGVKLNDPKVD-LNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAE 118 + G ++ K L LR LG++FQ+ L +VL N +M P+ V SR A A Sbjct: 61 VSGHDISRIKTSGLPYLRRNLGLIFQQQRLLADRSVLAN-VMLPLIVCGASRPDAERRAR 119 Query: 119 KLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLSV 178 L KVGLLD + P LSGG+QQRVAIARA+ P+++L DEPT+ LD +VL Sbjct: 120 AALDKVGLLDMASSGPLTLSGGEQQRVAIARAIVNRPQIILADEPTANLDRAAANKVLDA 179 Query: 179 MKQLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEE 217 +K G+T ++ TH+ F + + RV ++D G I+E Sbjct: 180 LKAFHSVGVTCLISTHDEQFL-DTATRVIYLDHGRIIES 217 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.139 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 516,985 Number of extensions: 20152 Number of successful extensions: 286 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 176 Number of HSP's successfully gapped: 66 Length of query: 240 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 159 Effective length of database: 921,564 Effective search space: 146528676 Effective search space used: 146528676 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)