BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0076.p (250 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 123 9e-30 gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 99 2e-22 gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 91 8e-20 gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 74 1e-14 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 123 bits (309), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 122/240 (50%), Gaps = 19/240 (7%) Query: 6 QWEIIGEYLPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLRYCVQW 65 +EII P + G TL+ ++ G +G +L + RL+ + + Sbjct: 5 DFEIITRTWPYLLAGLQYTLQLTVVAAFGGVIFGTLLAMARLSSNK----------TLSL 54 Query: 66 PIRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFASAVLAI 125 YV+ +R PL + I +F LMP+++ G E GA SA + Sbjct: 55 IAAAYVNLMRSIPLLLVIFWFYF-LMPIVLQTITG--------SERPVQLGADRSAYITF 105 Query: 126 TLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYMATLRRVVLPQAFRRMLPPLGNNAIA 185 + AY EI RAGIQSI +GQ A +LG++Y +++ VVLPQAFR MLP L I Sbjct: 106 IMFEAAYFCEIMRAGIQSISKGQVNAGYALGLTYRQSMQLVVLPQAFRNMLPILLTQTIV 165 Query: 186 IVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWVITLALSALVRHLEARYG 245 + +D SL S + + + AA V+ +R E YL ++++Y+V++ ALS LV+ L+ R+ Sbjct: 166 LFQDVSLVSLLNVTDFVGAAVKVAQRDSRVVEMYLFVAIVYFVLSFALSTLVKQLQKRFA 225 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 99.4 bits (246), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 120/236 (50%), Gaps = 23/236 (9%) Query: 11 GEYLPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLRYCVQWPIRF- 69 G +L + G TL A+ I G ++GVGR +E R W +R Sbjct: 15 GTWLESLLSGLGWTLAVALFAWIFAFVVGSIVGVGRTSEKR-------------WLVRLG 61 Query: 70 --YVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFASAVLAITL 127 YV R PL VQ + +F ++P L+ +++ D F +AV+ + Sbjct: 62 GAYVELFRNIPLLVQFFVWYF-VVPGLVPAVKAWVITLDPTEH------QFVTAVVCLGF 114 Query: 128 NSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYMATLRRVVLPQAFRRMLPPLGNNAIAIV 187 + + ++E R+GIQ++ RGQ A +LG++ T R V+LP A+R ++PPL + + ++ Sbjct: 115 FTSSRIAEQVRSGIQALPRGQRNAGYALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLI 174 Query: 188 KDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWVITLALSALVRHLEAR 243 K++++A +IGL EL + R + RY+E + ++IY VI + + L+ +E R Sbjct: 175 KNTAVAYSIGLVELFFRTREMGEMTFRYFEAFGAATLIYVVIAMTANRLMALVERR 230 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 90.5 bits (223), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 18/177 (10%) Query: 68 RFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFASAVLAITL 127 R Y+ +GTPL +Q+ L+ F G+ L G A+ +A L +TL Sbjct: 54 RIYIEIFQGTPLLMQLFLVFF-----------GIALFGI-------EVPAWLAAGLTLTL 95 Query: 128 NSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYMATLRRVVLPQAFRRMLPPLGNNAIAIV 187 S ++++EI+R +++I RGQ EAS L M+Y+ +R V+LPQA R LPP ++ I+ Sbjct: 96 WSASFLAEIWRGCVEAIPRGQWEASSVLAMNYVQQMRYVILPQALRIALPPTIGFSVQII 155 Query: 188 KDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWVITLALSALVRHLEARY 244 K +++ S IG EL+ AA ++ A + Y + Y+++ LS + LE ++ Sbjct: 156 KGTAVTSIIGFVELSKAATVITNATFMPFTVYAAAGLFYFILCWPLSRYSQFLERKF 212 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 73.6 bits (179), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 64/101 (63%) Query: 120 SAVLAITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYMATLRRVVLPQAFRRMLPPL 179 +A+LA+ +N GAY +EI RAG+ ++ RGQ EA+ SL M+ + R ++L A +++ P L Sbjct: 92 AAILAMVINLGAYSTEIIRAGVVAVARGQIEAALSLSMTRVQIFRHIILRPALQKIWPAL 151 Query: 180 GNNAIAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYL 220 + + ++ S++ S I + EL++AA + G R +E YL Sbjct: 152 SSQIVIVMLGSAVCSQIAVEELSFAANFIQGRNFRAFEAYL 192 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 589,078 Number of extensions: 24054 Number of successful extensions: 100 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 4 Length of query: 250 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 169 Effective length of database: 921,564 Effective search space: 155744316 Effective search space used: 155744316 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)