BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0073.p
         (633 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980039|ref|YP_001355223.1| KUP system potassium uptake pro...   638   0.0  

>gi|152980039|ref|YP_001355223.1| KUP system potassium uptake
           protein [Janthinobacterium sp. Marseille]
          Length = 625

 Score =  638 bits (1646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/621 (50%), Positives = 440/621 (70%), Gaps = 1/621 (0%)

Query: 13  RSRKFHMITLAALGVVFGDIGTSPLYALKECFSPDHGIAFSPGAVLGIISMLFWAITIVV 72
           +      +TLAA+G+V+GDIGTSPLY +KE FS +HG+A +P  +LG++S++ W + I+V
Sbjct: 6   KKSSLAALTLAAVGIVYGDIGTSPLYTMKEVFSKEHGLALTPENLLGVVSLIVWGLIIIV 65

Query: 73  TIKYVMFVLRADNNGEGGVLALMALSLRSAVSGSPRAKLLLMLGVFGACMFYGDVVITPA 132
           ++KYV  VLRA+N GEGG++ALMAL+L S    S     LL++G+FGA +FYGD VITPA
Sbjct: 66  SLKYVTLVLRANNRGEGGIMALMALALSSVTRNSRWYFPLLVMGLFGATLFYGDSVITPA 125

Query: 133 ISVLSAVEGLEIAAPSTAHVVIPLTLVIVVVLFLIQRHGTSVVGRFFGPVMFLWFFSLAL 192
           ISVLSA+EGL +A  +    V+PLT+ ++V L+ +Q  GT+ +G++FGP+M +WF +LA+
Sbjct: 126 ISVLSAIEGLSVATETFDPYVVPLTVAVLVGLYSVQARGTAGIGKWFGPIMVVWFATLAV 185

Query: 193 LGLYNIVKAPEVLVAINPYYAVHFMAEHSLQAFIVLGSVVLVLTGAEALYADMGHFGIKP 252
           +G+ NI+ APE+L A+NP++A+HF+  +   AFI LG+VVL  TGAEALYADMGHFG KP
Sbjct: 186 MGVVNIIDAPEILYALNPWHALHFLDGNRFLAFIALGAVVLAFTGAEALYADMGHFGAKP 245

Query: 253 IRYAWLFTVMPSLLINYFGQGANLIANPKAIANPFYLMIPEPLVLPMVLLATCATVIASQ 312
           IR AW     P+L +NY GQGA L+ +P A+ NPFY  +    + P+V L+T A +IASQ
Sbjct: 246 IRMAWFLVAFPALALNYLGQGALLLMHPDAVTNPFYQQLGAWSIYPLVALSTMAAIIASQ 305

Query: 313 AVISGAFSLTSQAILLGFVPRMRILHTSEDEQGQIYIPLINWMLLVLVVAVVLAFKKSDN 372
           A ISG FS+T QAI LGF+PRM+I  TS  + GQIYIP +NW+ + +VV  V+ F  S +
Sbjct: 306 ATISGTFSMTKQAIALGFLPRMKIEFTSASQIGQIYIPAVNWLQMAVVVMAVVGFGSSSD 365

Query: 373 LAAAYGVAVTTTMVITTMLLGVVMRHIWKWRNSALVVTITFLLVVDLAFFAANLLKLTEG 432
           LAAAYG+AVT TM++TT+L   V+R+ WK+     + +  F LV+DL+ F+AN+LKL  G
Sbjct: 366 LAAAYGIAVTATMLVTTILTFFVIRYRWKYNLLLCLASTGFFLVIDLSLFSANMLKLFHG 425

Query: 433 GWFPLVIGGAAFFLLMTWYSGRMLLRMRIKDDGIPIEPFIEGLLAHPPHRVGGTAVFMTG 492
           GWFPL++G   F L++TW  GR L+   ++   IP+E F+  L   PP RV GTA+F+ G
Sbjct: 426 GWFPLLLGTILFTLMLTWKRGRELVFENLQKHAIPLEDFLASLFISPPTRVPGTAIFLRG 485

Query: 493 NIATVPVALLHNLKHNRILHERVFFLKISIWDVPYVADSERLTMKDLGGDIYLLRAAFGF 552
               VP A+LHNL HN++LHERV FL + + +VPYV  ++++ +  LG D Y +   +GF
Sbjct: 486 ESDGVPHAMLHNLSHNKVLHERVVFLTVRMMEVPYVPTTDQVRIHLLGDDCYQMDVTYGF 545

Query: 553 KEAPEVQKVMTLTEQQFGHHFDLMDTSFFLARDTVVPSKLLGMSLWRERIFAWMYQNGAK 612
           K  P++   + L + Q G  F++M+TSFF+AR TVV + + GM+LWRE IF  M ++   
Sbjct: 546 KNVPDIPAALELAKDQ-GLEFEMMETSFFIARQTVVANPVRGMALWREHIFVAMSRHARG 604

Query: 613 PSDFFHIPANRVVELGTKVEI 633
            +D++ IP+NRV+ELGTKVEI
Sbjct: 605 AADYYQIPSNRVIELGTKVEI 625


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.142    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,401,751
Number of extensions: 57179
Number of successful extensions: 201
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 544
Effective length of database: 891,988
Effective search space: 485241472
Effective search space used: 485241472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)