BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0071.p
         (342 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980797|ref|YP_001354175.1| ABC-type sulfonate/nitrate tran...   371   e-104

>gi|152980797|ref|YP_001354175.1| ABC-type sulfonate/nitrate
           transport system substrate-binding protein
           [Janthinobacterium sp. Marseille]
          Length = 347

 Score =  371 bits (952), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 173/324 (53%), Positives = 243/324 (75%), Gaps = 1/324 (0%)

Query: 19  VAVSLLGAPLVARAEGQLRIAEQFGIVYLLLNVAQDQQLIEKHGKAAGVDIKVQWLKLSG 78
           VA +LL A L ARAEG++ IA+QFGI YL+L+V +D+QLIEK+GK  G+DI+V W  +SG
Sbjct: 25  VATALLSA-LPARAEGKISIAQQFGIGYLILDVVRDRQLIEKYGKQQGIDIQVDWASISG 83

Query: 79  GSAVNDALLSGSVDIAGAGVGPLLTIWDRTRGRQNVRGVASLGNFPYYLVSNNPKVKTIA 138
            +A+N+ALL+G++D+  AGV P+LT+WDRTRG+QNV+ VA+LG+ P YL+SNNP VKT+ 
Sbjct: 84  ATAMNEALLAGALDVVSAGVPPMLTMWDRTRGKQNVKAVAALGSLPNYLLSNNPAVKTLK 143

Query: 139 DFSDKDRIAVPAVGVSVQSRVLQLASAKLWGDAQYNRLDKISIAVPHPDATAAIISGGTE 198
           D SDKDRIAVPA GV  QSR LQ+ +A+ +G   + + D IS+++PHPDATAA+I+GG+E
Sbjct: 144 DLSDKDRIAVPAAGVGFQSRTLQIETARQFGKDNFKKFDNISVSLPHPDATAALIAGGSE 203

Query: 199 ITGHFGNPPFQEQELAGNPNAHIVLNSYDVLGGPSSATVLYATEKFRQDNPKTYGAFLGA 258
           I  HF + PF  Q LA N N H V++SYD+LGGP++  VLY T+KF  +NPKTY AF  A
Sbjct: 204 INTHFSSAPFYYQALAANSNVHKVISSYDILGGPATFNVLYTTQKFHDENPKTYKAFYAA 263

Query: 259 LDEAARFIAANPEKAADIYLKVSQGNTDRKLLLQIIKNPEVQFKIAPQNTYGLAEFMHRV 318
           L EAA+ I A+  KAAD ++++ +     +L+ +I+++PE  F ++P  T+  A+ + ++
Sbjct: 264 LVEAAQLIKADKAKAADTFIRIQKSKLSPELVRKIVEDPENDFTVSPHRTFVYADELQKL 323

Query: 319 GAIKNKPASVKDYFFDDVHIQGGS 342
           G IKNK AS KDYFF++ + Q GS
Sbjct: 324 GVIKNKAASWKDYFFEEAYAQPGS 347


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 831,233
Number of extensions: 35358
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 258
Effective length of database: 910,473
Effective search space: 234902034
Effective search space used: 234902034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)