BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0070.p
         (338 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980797|ref|YP_001354175.1| ABC-type sulfonate/nitrate tran...   530   e-152

>gi|152980797|ref|YP_001354175.1| ABC-type sulfonate/nitrate
           transport system substrate-binding protein
           [Janthinobacterium sp. Marseille]
          Length = 347

 Score =  530 bits (1364), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 254/347 (73%), Positives = 300/347 (86%), Gaps = 9/347 (2%)

Query: 1   MPSLRKSYKS--------FAALLASLITLGSAANAHAEGSIRIAQQFGIGYLILDVVQDQ 52
           MP L ++Y++          +++A    L SA  A AEG I IAQQFGIGYLILDVV+D+
Sbjct: 1   MPHLNRTYRAPRRRWIGAAFSVIAVATALLSALPARAEGKISIAQQFGIGYLILDVVRDR 60

Query: 53  KLIEKYGKQEGLDIKVEWTSLSGATGMNEALLAGALDVVSAGAPPALVLWDRTRGRQNVK 112
           +LIEKYGKQ+G+DI+V+W S+SGAT MNEALLAGALDVVSAG PP L +WDRTRG+QNVK
Sbjct: 61  QLIEKYGKQQGIDIQVDWASISGATAMNEALLAGALDVVSAGVPPMLTMWDRTRGKQNVK 120

Query: 113 AIASLGSMPNYLLSNNPQVKSIKDFSDKDRIAVPAAGVGFQSRTLQIETAKVYGKADFKR 172
           A+A+LGS+PNYLLSNNP VK++KD SDKDRIAVPAAGVGFQSRTLQIETA+ +GK +FK+
Sbjct: 121 AVAALGSLPNYLLSNNPAVKTLKDLSDKDRIAVPAAGVGFQSRTLQIETARQFGKDNFKK 180

Query: 173 FDRITVSLSHPDATAALIAGGSEINAHFSSPPFQYQAL-EHKNVHKVISSYDILGGPATF 231
           FD I+VSL HPDATAALIAGGSEIN HFSS PF YQAL  + NVHKVISSYDILGGPATF
Sbjct: 181 FDNISVSLPHPDATAALIAGGSEINTHFSSAPFYYQALAANSNVHKVISSYDILGGPATF 240

Query: 232 NVLYTTQKFHDDNPKTYRAFYQALVEAAEFVRNNKDKAADTFIRVQKSKLSPQFVRRIVE 291
           NVLYTTQKFHD+NPKTY+AFY ALVEAA+ ++ +K KAADTFIR+QKSKLSP+ VR+IVE
Sbjct: 241 NVLYTTQKFHDENPKTYKAFYAALVEAAQLIKADKAKAADTFIRIQKSKLSPELVRKIVE 300

Query: 292 DPEINFTVSPERSFVYAEKLYELGILKNRASSWKDYFFEEAYAQPGS 338
           DPE +FTVSP R+FVYA++L +LG++KN+A+SWKDYFFEEAYAQPGS
Sbjct: 301 DPENDFTVSPHRTFVYADELQKLGVIKNKAASWKDYFFEEAYAQPGS 347


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 777,305
Number of extensions: 31218
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 254
Effective length of database: 910,473
Effective search space: 231260142
Effective search space used: 231260142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)