BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0069.p (289 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport sys... 399 e-112 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 193 9e-51 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 164 6e-42 gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPa... 160 8e-41 gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bica... 155 4e-39 >gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 294 Score = 399 bits (1025), Expect = e-112, Method: Compositional matrix adjust. Identities = 195/255 (76%), Positives = 217/255 (85%) Query: 13 AAAAFKPLLQVQHVSLQYRSATAVVQATHDVSFDVHTADRFVLLGPSGCGKSSLLKSVAG 72 A A PLLQV VSL+YR+ VV+ATH VSFDVH ADRFVLLGPSGCGKS+LLK+VAG Sbjct: 32 ALPASAPLLQVDDVSLEYRTRERVVRATHRVSFDVHQADRFVLLGPSGCGKSTLLKAVAG 91 Query: 73 FLPPAAGDIRLDGQMVRQPGPDRIVVFQEFDQLPPWKTVLHNVMFPLLASRTLGKREAAE 132 F+ P G+IRLDG+ V PGPDRIVVFQEFDQL PWKTV NV+FPLLASRTLG++EA E Sbjct: 92 FILPVEGEIRLDGKAVTAPGPDRIVVFQEFDQLSPWKTVKQNVIFPLLASRTLGRKEAEE 151 Query: 133 RARHYLDKVGLAHFANAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKM 192 RA HYL KVGL+ F++ +PH LSGGMK RVAIARALAMQP++LLMDEPFAALDALTRRKM Sbjct: 152 RALHYLAKVGLSKFSDVHPHQLSGGMKQRVAIARALAMQPRVLLMDEPFAALDALTRRKM 211 Query: 193 QEELLALWEEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINSHQYDLGSLGGVG 252 QEELL LW+EV FTLLFVTHSIEEALVVGNRI LLSPHPGR+RAEINSH + L SLG Sbjct: 212 QEELLQLWDEVHFTLLFVTHSIEEALVVGNRIALLSPHPGRMRAEINSHDFSLASLGSTE 271 Query: 253 FQQTAQRIHRLLFED 267 FQ TAQRIH +LFE+ Sbjct: 272 FQNTAQRIHHMLFEE 286 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 193 bits (491), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 96/221 (43%), Positives = 143/221 (64%), Gaps = 2/221 (0%) Query: 19 PLLQVQHVSLQYRSATAVVQATHDVSFDVHTADRFVLLGPSGCGKSSLLKSVAGFLPPAA 78 P + ++ VS + VQA +V+ ++ + L+G SGCGKS+LL+ +AGF ++ Sbjct: 12 PAIDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSS 71 Query: 79 GDIRLDGQMVRQPGPDRIVVFQEFDQLPPWKTVLHNVMFPLLASRTLGKREAAERARHYL 138 G + G + P P+R +VFQ++ L PW TV N+ F R L K + E + +Y Sbjct: 72 GSANMYGMPIDGPSPERGMVFQDYG-LFPWLTVKENIGFGQ-RQRNLPKAKLEELSAYYT 129 Query: 139 DKVGLAHFANAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLA 198 D VGL FAN YP LSGGMK RVAIAR LA ++LLMDEPF ALDALTR K+Q++LL Sbjct: 130 DMVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLLE 189 Query: 199 LWEEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEIN 239 +WE + T++FVTH++EEA+++ +R+++++ PGR+ +I Sbjct: 190 IWERTKVTVVFVTHAVEEAVMLSDRVVVMTAGPGRIEEDIK 230 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 164 bits (415), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 126/220 (57%), Gaps = 3/220 (1%) Query: 21 LQVQHVSLQYRSATAVVQATHDVSFDVHTADRFVLLGPSGCGKSSLLKSVAGFLPPAAGD 80 + +QH + + + + A +V+ V + L+G SGCGKS+LL +AG G Sbjct: 9 IDIQHAEMSFSTKKGIFNALTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQATGGM 68 Query: 81 IRLDGQMVRQPGPDRIVVFQEFDQLPPWKTVLHNVMFPL--LASRTLGKREAAERARHYL 138 + + + P P+R VVFQ LP W T NV + + S T K E R R L Sbjct: 69 LLCGNREIAGPSPERAVVFQNHSLLP-WLTCYENVYLAVERVFSATESKAELKARTRAAL 127 Query: 139 DKVGLAHFANAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLA 198 VGL+H P+ +SGGMK RV IARAL+M+PK+LLMDEPF ALDALTR +Q+ELL Sbjct: 128 ALVGLSHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLK 187 Query: 199 LWEEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEI 238 + T++ VTH ++EA+++ +RI++L+ P EI Sbjct: 188 IVAATGSTVVMVTHDVDEAVLLSDRIVMLTNGPSATIGEI 227 >gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 160 bits (405), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 86/197 (43%), Positives = 126/197 (63%), Gaps = 9/197 (4%) Query: 41 HDVSFDVHTADRFVLLGPSGCGKSSLLKSVAGFLPPAAGDIRLDGQMVRQPGPDR-IVVF 99 D+S + + ++G SG GKS+LL++ AG + P++GD++L ++ + PG R VVF Sbjct: 23 QDLSLTIEAGEFVAIVGGSGVGKSTLLRAAAGLIAPSSGDVQL--KLPQLPGRRRRAVVF 80 Query: 100 QEFDQLPPWKTVLHNVMFPLLASRTLG--KREAAERARHYLDKVGLAHFANAYPHTLSGG 157 Q+ +L PW+TV NV + L TLG E R + L GLA F +PH LSGG Sbjct: 81 QD-GRLLPWRTVADNVAYGL---ETLGISADEQQSRIKQALQLTGLAEFGERWPHQLSGG 136 Query: 158 MKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLALWEEVRFTLLFVTHSIEEA 217 RV IARALA+QP +LLMDEPF+A+DALTRR +Q EL+ +W+ + ++FVTH I+EA Sbjct: 137 QVQRVGIARALAVQPDLLLMDEPFSAVDALTRRNLQAELIRIWQATQSAVMFVTHDIDEA 196 Query: 218 LVVGNRILLLSPHPGRV 234 + + +R+++L P V Sbjct: 197 VFLADRVIVLGGSPATV 213 >gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 433 Score = 155 bits (391), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 132/224 (58%), Gaps = 6/224 (2%) Query: 20 LLQVQHVSLQYRSATAVVQAT-HDVSFDVHTADRFVLLGPSGCGKSSLLKSVAGFLPPAA 78 L++++ V +++A + V F + + LLG SG GKS+LL+ +AG +P + Sbjct: 6 LIELKGVDKSFQTADGTPSSVLEQVDFTLTEGEIVALLGKSGSGKSTLLRIMAGLIPADS 65 Query: 79 GDIRLDGQMVRQPGPDRIVVFQEFDQLPPWKTVLHNVMFPLLASRTLGKREAAERARHYL 138 G G+ + P +VFQ F L PW TV NV L A + + E +RA L Sbjct: 66 GSAMYRGKNIYGPVAGIAMVFQSF-ALFPWLTVQQNVELGLEA-QGVPPAEREKRADAML 123 Query: 139 DKVGLAHFANAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLA 198 D +GLA F A P LSGGMK RV IAR L P +LLMDE F+ALD LT +++++L Sbjct: 124 DLIGLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILE 183 Query: 199 LWEEVRF---TLLFVTHSIEEALVVGNRILLLSPHPGRVRAEIN 239 +WEE R +L V+H+IEEA+++ +RI++LS PGR+R+EI Sbjct: 184 MWEENRIPTKGILIVSHNIEEAVMMSDRIVVLSSSPGRIRSEIK 227 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 644,174 Number of extensions: 25948 Number of successful extensions: 261 Number of sequences better than 1.0e-08: 54 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 56 Length of query: 289 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 207 Effective length of database: 917,867 Effective search space: 189998469 Effective search space used: 189998469 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)