BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0068.p (288 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980798|ref|YP_001354173.1| ABC-type sulfonate/nitrate tran... 399 e-112 gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport sys... 97 9e-22 gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bica... 84 7e-18 gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bica... 71 8e-14 gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport syst... 59 3e-10 >gi|152980798|ref|YP_001354173.1| ABC-type sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 294 Score = 399 bits (1025), Expect = e-112, Method: Compositional matrix adjust. Identities = 206/285 (72%), Positives = 247/285 (86%) Query: 4 TPPIRDEYEIPLTPLPGLVLQRQFSLPQRIWQQGWVRKGAILLLLALVWEGVARWQNNDL 63 PP+R EYE+ L P L ++R+ L R+W QGW+RK IL++LA++WE VARWQ+N+L Sbjct: 10 NPPVRPEYELKLKPFTELPVERELPLGSRLWAQGWLRKSVILVVLAVIWEVVARWQDNEL 69 Query: 64 LLPTFLQTAQAFVDGIRSGELFGKTWLSLQVLMKAYVLGIVAAFVLTTLAVSSQFGRDLL 123 LLPTF+ TAQA V+GI SGEL K +SL VL++ Y +G++AAF+LTTLAVS+Q GRDLL Sbjct: 70 LLPTFIATAQALVEGISSGELLAKVGISLSVLLQGYAIGVLAAFILTTLAVSTQLGRDLL 129 Query: 124 GTLTSMFNPLPAIALLPIALLWFGLGQGSLIFVLVHSVLWALAVNTYAGFLGVSDTLRMA 183 TLTSM NPLPAIALLP+ALLWFG+G+GSL+FVLVHSVLW +A+NTYAGF GV DTLRMA Sbjct: 130 DTLTSMLNPLPAIALLPLALLWFGIGRGSLVFVLVHSVLWPMALNTYAGFQGVPDTLRMA 189 Query: 184 GRNYGLHGLRFVLQVLVPAALPSILAGLRIGWAFAWRTLIAAELVFGATSGQGGLGWYIF 243 GRNYGL G+ +VLQ+LVPAALP+IL+GL+IGWAFAWRTLIAAELVFGA+SG+GGLGWYIF Sbjct: 190 GRNYGLRGIPYVLQILVPAALPAILSGLKIGWAFAWRTLIAAELVFGASSGKGGLGWYIF 249 Query: 244 QNRNELYTDKVFAGLAMVILIGLLVENLVFNTLERVTVKKWGMQR 288 QNRNELYTDKVFAGLA VILIGL+VEN+VF TLE+ TV+ WGMQR Sbjct: 250 QNRNELYTDKVFAGLATVILIGLMVENIVFRTLEKATVQHWGMQR 294 >gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 276 Score = 97.4 bits (241), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 109/217 (50%), Gaps = 5/217 (2%) Query: 61 NDLLLPTFLQTAQAFVDGIRSGELFGKTWLSLQVLMKAYVLGIVAAFVLTTLAVSSQFGR 120 + +LP A+A + SGEL+ +SL ++ +G +L L + + Sbjct: 53 SSRILPEPFAVAKAAWELALSGELWTHVKVSLWRATTSFAVGGGLGLLLGLLTGTFKTAE 112 Query: 121 DLLGTLTSMFNPLPAIALLPIALLWFGLGQGSLIFVLVHSVLWALAVNTYAGFLGVSDTL 180 LL T M +PA+AL+P+ +LWFG+ + S IF++ V + + +NT+ G V L Sbjct: 113 TLLDTTLQMIRNIPALALIPLVILWFGIEETSKIFLVAVGVFFPVYLNTFHGIRSVDKGL 172 Query: 181 RMAGRNYGLHGLRFVLQVLVPAALPSILAGLRIGWAFAWRTLIAAELVFGATSGQGGLGW 240 ++YGL G V++P ALPSIL G+R W LI AE + S Q G+G+ Sbjct: 173 IEMAKSYGLSGWSLYRDVILPGALPSILVGVRFSLGLVWVLLIVAETI----SAQSGIGY 228 Query: 241 YIFQNRNELYTDKVFAGLAMVILIGLLVENLVFNTLE 277 R L TD V G+ + L+G L ++V TLE Sbjct: 229 MTMNAREFLQTDVVLVGILLYALLGKLA-DVVSRTLE 264 >gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 276 Score = 84.3 bits (207), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 4/153 (2%) Query: 120 RDLLGTLTSMFNPLPAIALLPIALLWFGLGQGSLIFVLVHSVLWALAVNTYAGFLGVSDT 179 RDLL + P+P A LP+++++FG+G + IF++ + + NT G V + Sbjct: 112 RDLLDPTLQLLRPVPVTAWLPLSMIFFGIGPNAAIFLVFLGAFYPIVFNTTFGVKAVDNR 171 Query: 180 LRMAGRNYGLHGLRFVLQVLVPAALPSILAGLRIGWAFAWRTLIAAELVFGATSGQGGLG 239 L A G +G QV++PAA+PSIL GLR+G FAW ++ E+ T GLG Sbjct: 172 LFEAALMLGCNGSSLFRQVVLPAAMPSILNGLRLGHGFAWILIVVGEM----TGVPEGLG 227 Query: 240 WYIFQNRNELYTDKVFAGLAMVILIGLLVENLV 272 I R TD V AG+ ++ ++G + ++ Sbjct: 228 AVIMDGRMLSRTDLVIAGMVVIGIVGYSTDRIL 260 >gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 296 Score = 71.2 bits (173), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 4/182 (2%) Query: 91 SLQVLMKAYVLGIVAAFVLTTLAVSSQFGRDLLGTLTSMFNPLPAIALLPIALLWFGLGQ 150 S+ + Y +G V A + S+ +P++A +P+ LLWFG+ + Sbjct: 100 SVARVFSGYAIGAVLAILFGLFVGLSKHAEAFFEPTFQALRAIPSLAWVPLLLLWFGIDE 159 Query: 151 GSLIFVLVHSVLWALAVNTYAGFLGVSDTLRMAGRNYGLHGLRFVLQVLVPAALPSILAG 210 I ++ + + + +G V L G YGL ++++PAALPS+ G Sbjct: 160 TPKITLIAIGAFFPIYLGLVSGIRNVDRKLIELGEIYGLSAPALARRIVLPAALPSLFTG 219 Query: 211 LRIGWAFAWRTLIAAELVFGATSGQGGLGWYIFQNRNELYTDKVFAGLAMVILIGLLVEN 270 LR G + AW L+AAEL+ + G+G+ + R D V A + ++ ++G L + Sbjct: 220 LRNGLSLAWMFLVAAELI----AATKGIGYLLTDGRETSRPDVVLAAIFLLAILGKLTDG 275 Query: 271 LV 272 L+ Sbjct: 276 LL 277 >gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport system, permease component [Janthinobacterium sp. Marseille] Length = 309 Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 20/238 (8%) Query: 45 LLLLALVWEGV-ARWQNNDLLLPTFLQTAQA-FVDGIRSG--ELFGKTWLSLQVLMK--- 97 ++ L LVWE + A+ L TF Q+AQA F D S G W L L + Sbjct: 66 MVFLILVWEIISAKSSGIPSPLVTF-QSAQALFADPFYSNGPNDQGIGWNILASLKRVGM 124 Query: 98 ----AYVLGIVAAFVLTTLAVSSQFGRDLLGTLTSMFNPLPAIALLPIALLWFGLGQGSL 153 A ++GI F++ +F + + S+ P+ +A LPI LL F + Sbjct: 125 GFGMAALVGIPLGFMIGRF----KFLSGMFNPIISLLKPVSPLAWLPIGLLVFKAADPAA 180 Query: 154 IFVLVHSVLWALAVNTYAGFLGVSDTLRMAGRNYGLHGLRFVLQVLVPAALPSILAGLRI 213 I+ + +W + +NT G V + L + V ++L P+ LP +L G+R+ Sbjct: 181 IWSIFICSIWPMIINTAVGVQRVPQDYMNVAKVLKLSEWKIVTKILFPSVLPYMLTGVRL 240 Query: 214 GWAFAWRTLIAAELVFGATSGQGGLGWYIFQNRNELYTDKVFAGLAMVILIGLLVENL 271 AW ++AAE++ G G+G++++ N L + + ++ ++GL++E + Sbjct: 241 AIGTAWLVIVAAEMLTGGV----GIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQI 294 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.142 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 692,676 Number of extensions: 29017 Number of successful extensions: 146 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 6 Length of query: 288 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 206 Effective length of database: 917,867 Effective search space: 189080602 Effective search space used: 189080602 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)