BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0067.p
         (190 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981545|ref|YP_001351826.1| methylated-DNA-[protein]-cystei...   145   1e-36
gi|152981780|ref|YP_001352163.1| methylated-DNA-[protein]-cystei...    71   4e-14

>gi|152981545|ref|YP_001351826.1| methylated-DNA-[protein]-cysteine
           methyltransferase [Janthinobacterium sp. Marseille]
          Length = 164

 Score =  145 bits (367), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 98/153 (64%), Gaps = 3/153 (1%)

Query: 10  SPAGLLKLVAKGDHLAAILWEDDDALRVRLG---EMVEDEDRPVLLETEQQLREYFAGER 66
           SP G+L L A G  +A I +E+    + + G      +      L ET +QL EYF+G R
Sbjct: 9   SPVGILLLAATGQGIAGIYFEEHKHFKGKDGWQPASAQSAANKHLQETARQLDEYFSGRR 68

Query: 67  ESFDLPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIARQLGNEKAVRAVGAANGRNPISI 126
             FD+ L   GT FQR VW  L  IP+G + +Y   A++LGN KA+RAVG+A G+NP+SI
Sbjct: 69  TEFDVTLDMSGTAFQRSVWQELSAIPFGASVSYAQHAQRLGNPKALRAVGSAIGKNPVSI 128

Query: 127 IAPCHRVIGSGGELTGFAGGLHVKKLLLAIEGI 159
           I PCHRVIGS G +TG+AGGL  K+ LLA+EG+
Sbjct: 129 IVPCHRVIGSSGAVTGYAGGLERKRFLLALEGV 161


>gi|152981780|ref|YP_001352163.1| methylated-DNA-[protein]-cysteine
           methyltransferase [Janthinobacterium sp. Marseille]
          Length = 166

 Score = 70.9 bits (172), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 10/110 (9%)

Query: 57  QLREYFAGERESFDLPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIARQLGNEKAVRAVG 116
           Q+  Y       FDLPL   GT+FQ +VW A+ +I  G+  TY DIAR++  + A RAVG
Sbjct: 56  QVERYLGDPDFRFDLPLAPIGTDFQNKVWKAIAEISRGEVLTYGDIARRV--KSAPRAVG 113

Query: 117 AANGRNPISIIAPCHRVIGSGGELTGFA-----GGLH--VKKLLLAIEGI 159
            A G N   ++ PCHRV  + G L GF+        H  VK+ LLA E +
Sbjct: 114 QACGANWYPLVIPCHRVTAANG-LGGFSHYDDETSFHVGVKRWLLAHEMV 162


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 465,047
Number of extensions: 19488
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 112
Effective length of database: 932,655
Effective search space: 104457360
Effective search space used: 104457360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)