BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0062.p
         (609 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979912|ref|YP_001353525.1| ferrous iron transport protein ...   749   0.0  

>gi|152979912|ref|YP_001353525.1| ferrous iron transport protein B
           [Janthinobacterium sp. Marseille]
          Length = 610

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/601 (65%), Positives = 464/601 (77%), Gaps = 3/601 (0%)

Query: 7   NIALVGNPNCGKTALFNQLTGARQKVANYAGVTVERKSGAFTAPSGRQVRVVDLPGAYSL 66
            IALVGNPNCGKTALFNQLTG+RQKVANYAGVTVERK G FTAPSGR   ++DLPGAYSL
Sbjct: 5   RIALVGNPNCGKTALFNQLTGSRQKVANYAGVTVERKEGRFTAPSGRVFSLLDLPGAYSL 64

Query: 67  QSVSPDERVTQAVLQGRYPGEAVPDLIVCVADATNLRLHLRFVLEVRRLGLPMVLALNMM 126
            + SPDE +T+ +  GR  GEA P+LIVCV DATNLRLHLRFVLEV+RLG PMVLALNMM
Sbjct: 65  DATSPDEVITRDICLGRRAGEAAPELIVCVVDATNLRLHLRFVLEVKRLGRPMVLALNMM 124

Query: 127 DAAARRGIRIDVAALSQRLGMPVIETVAVKRGGARALVDAIDVKQVPAAAAAVPPIDDLH 186
           DAA +RG+ ID   L ++LGM VIETVA+  GGA+ LV+ +D        A V    ++H
Sbjct: 125 DAARKRGVTIDREELQRQLGMDVIETVAIHNGGAKDLVEHLDKVVAKELVAPVVHEGEVH 184

Query: 187 VEVRAILAATVVMPAATDRRDDAIDRIVLHPVLGLLVLALTMFLVFQAVYAIGKPMTDAI 246
            +VR ILAA VVMP AT   DD IDR VLHPV GL +LAL MF +FQAV++  +P+ D I
Sbjct: 185 EQVRQILAAAVVMPTATSGIDDTIDRWVLHPVFGLAILALVMFFIFQAVFSWAEPLMDGI 244

Query: 247 ADGFGTLGGVVGAWLPEGPLRGLVTDGLLAGLGTVLGFLPQILVLFFFILLLEESGYLPR 306
            +G    G    A LP+G LR L+ DGL AGLG VL FLPQIL+LF FIL+LEESGYLPR
Sbjct: 245 TEGVTVTGEWFAATLPDGMLRSLIVDGLFAGLGAVLVFLPQILILFLFILVLEESGYLPR 304

Query: 307 AAFVLDKLMVSVGLSGRSFIPLLSSFACAIPGIMGTRSITDPRDRLATILVAPLMTCSAR 366
           AAF+LD+LM   GL+GRSFIPLLSSFACAIPGIM TRSI DPRDRL TILVAPLMTCSAR
Sbjct: 305 AAFLLDRLMFKAGLTGRSFIPLLSSFACAIPGIMATRSIQDPRDRLTTILVAPLMTCSAR 364

Query: 367 LPVYALLIGAFIPHHPVLGIFNLQGLALFCLYVAGIAAAMLVAWVAKRIGRSRQERALLM 426
           LPVY LLI AFIP   V GIFNLQG+ LF LYVAGI +AM VAW  KR+ + + E ALLM
Sbjct: 365 LPVYTLLIAAFIPSSTVWGIFNLQGIVLFVLYVAGIVSAMAVAWFIKRMRKDKSEHALLM 424

Query: 427 ELPSYRLPHWRDIALGLWERGAIFLKRLTGVMLALTVLMWAICTFPSPPADATRAAIDYS 486
           ELPSYR+P  R++A+GLWER  IFL+R+T ++L+LTVL+W + TFPSPP  AT  AIDYS
Sbjct: 425 ELPSYRMPGIRNVAIGLWERALIFLRRVTTIILSLTVLLWFLSTFPSPPEGATLPAIDYS 484

Query: 487 IAGYIGHSLQYLFAPLGFNWQISLSLIPAFAARETAVATLATVYAVGGEEGAALQQ---A 543
           +AG +G  ++ +FAP+GFNWQI ++LIP  AARE AVA L TVYA+ G E A   Q    
Sbjct: 485 LAGQLGRLMEPIFAPIGFNWQICIALIPGLAAREVAVAALGTVYAMSGSEEAVAAQLGPV 544

Query: 544 LATHISLASALSLMVWFAFAPQCMSTLAIIRRETQSWRLVALSFGYMFVLAYVASFLTYR 603
           +A   SLA+AL+L+ W+ FAPQC+STLA+IRRET SWR VA+S GY+F LAY+A+FLTY+
Sbjct: 545 IAAQWSLATALALLAWYVFAPQCLSTLAVIRRETNSWRTVAVSAGYLFGLAYLAAFLTYQ 604

Query: 604 I 604
           I
Sbjct: 605 I 605


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,263,711
Number of extensions: 49375
Number of successful extensions: 292
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 520
Effective length of database: 891,988
Effective search space: 463833760
Effective search space used: 463833760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)