BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0058.p (308 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 167 6e-43 gi|152981563|ref|YP_001352068.1| LysR family transcriptional reg... 165 3e-42 gi|152979810|ref|YP_001352746.1| LysR family transcriptional reg... 161 5e-41 gi|152982904|ref|YP_001352613.1| LysR family transcriptional reg... 159 2e-40 gi|152981603|ref|YP_001353709.1| LysR family transcriptional reg... 159 3e-40 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 167 bits (424), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 101/295 (34%), Positives = 158/295 (53%), Gaps = 12/295 (4%) Query: 7 IAVFIQAVEAGSFIRAAQRLHLSRSAVGKSIARLEERLGVRLFLRNTRSQSLTEEGRAYY 66 I +F A EAGSF AA ++ +AV +SI+RLE RLGVRLF+R TR LT+ GR Y+ Sbjct: 13 IELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGRVYF 72 Query: 67 QRCLRALEELESGQALVAEGRCEPTGRVHISSPVLFGRMCVAPVLVELARRWPQLDITAS 126 ++C AL +L + V+ G+ +P G + IS P +G + P+L E +R+P + + Sbjct: 73 EQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQVEVH 132 Query: 127 FTDRRVDLVEEGVDLVLRSGPLPDTSHLVARKMGVQTMMLCASPQYLADHGRPRHFSDLA 186 ++R +D EE DL +R G P S+L+ARK+ ++L A+P YL G+P+ DL Sbjct: 133 ISNRNIDFAEEAYDLAIR-GRAPTDSNLIARKLEEAELVLVAAPSYLKRAGKPKTLEDLQ 191 Query: 187 RHHAILY-----GKTTGWPIRDEEGKVRMAPVTSRLH-----FDDLEAIAAATVAGAGLA 236 +H I + G+ W + GKV+ V + +D+ I +GAGL Sbjct: 192 KHECIQFELPSTGRRIPW-VFHPNGKVQGKAVDIMTNGGYSCAEDVLGIVTLARSGAGLV 250 Query: 237 HLPCWLISTHVKAGRLVKLMPEESFATIDMHLAWSPTRHLPLRIRTVIDALAAAL 291 +++ ++ GRLV+L+P+ + L + RHL R+R +D L L Sbjct: 251 QTYRFIVEDDLREGRLVELLPQFGATSRPFILLYPHARHLSSRVRAFVDFLMEKL 305 >gi|152981563|ref|YP_001352068.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 165 bits (418), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 98/293 (33%), Positives = 151/293 (51%), Gaps = 6/293 (2%) Query: 1 MDSFNGIAVFIQAVEAGSFIRAAQRLHLSRSAVGKSIARLEERLGVRLFLRNTRSQSLTE 60 MD I F+ AVE SF AA L ++ VG+ I LE+RLGVRL R+TR +LTE Sbjct: 1 MDKLKQIEAFVMAVEHNSFAAAALALQVTPVMVGRRIDTLEKRLGVRLLHRSTRRLALTE 60 Query: 61 EGRAYYQRCLRALEELESGQALVAEGRCEPTGRVHISSPVLFGRMCVAPVLVELARRWPQ 120 EG Y + C + L ELE ++ ++ G + TG + +S+P FGR VAP E + P Sbjct: 61 EGSVYLEHCRKMLNELEHAESALSAGHNKVTGHLIVSAPASFGRQHVAPYAQEFLEQHPG 120 Query: 121 LDITASFTDRRVDLVEEGVDLVLRSGPLPDTSHLVARKMGVQTMMLCASPQYLADHGRPR 180 L ++ + TDR VDLV+EG D+ +R G D + VA K+ ++C + +Y HG+P+ Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGNIDPN-FVAIKLAANKRVVCGTREYFKKHGKPK 179 Query: 181 HFSDLARHHAILY----GKTTGWPIRDEEGKVRMAPVTSRLHFDDLEAIAAATVAGAGLA 236 DLA H+ + + G+ GW + GK L +D E + G G+A Sbjct: 180 TLDDLANHNCLSFNLQGGQQRGWYF-NYRGKTVSVRAQGSLDCNDGELLHRWMTEGLGIA 238 Query: 237 HLPCWLISTHVKAGRLVKLMPEESFATIDMHLAWSPTRHLPLRIRTVIDALAA 289 W I +++G L ++ + + D+ + R++P ++R I L A Sbjct: 239 WRSVWEIQRQLESGMLETVLDDYAIPEYDIMAVYPQQRNVPAKVRLFISHLKA 291 >gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 361 Score = 161 bits (408), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 100/303 (33%), Positives = 158/303 (52%), Gaps = 6/303 (1%) Query: 2 DSFNGIAVFIQAVEAGSFIRAAQRLHLSRSAVGKSIARLEERLGVRLFLRNTRSQSLTEE 61 D + + F+ G+ AA+ L ++ A K +A+LE RLGVRL R TRS SLT E Sbjct: 60 DITSELEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTSE 119 Query: 62 GRAYYQRCLRALEELESGQALVAEGRCEPTGRVHISSPVLFGRMCVAPVLVELARRWPQL 121 G Y R L E++ + V+ G P G + +++ + FGR +AP++ E RR+PQ+ Sbjct: 120 GEIYLGYAARILAEVKEMEDAVSSGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQV 179 Query: 122 DITASFTDRRVDLVEEGVDLVLRSGPLPDTSHLVARKMGVQTMMLCASPQYLADHGRPRH 181 ++ +D+ +DLVE G DL +R G LPDT L ARK+ LCASP YL HG P+ Sbjct: 180 EVQFEVSDKPIDLVENGFDLAIRFGTLPDT-RLNARKLMSNRRFLCASPIYLERHGTPQT 238 Query: 182 FSDLARHHAILYGKT----TGWPIRDEEGKVRMAPVTSRLHFDDLEAIAAATVAGAGLAH 237 +DL+RH I + + W +G+ + V S L +D + + + G+ Sbjct: 239 LADLSRHRCITHRQNDEAAATWRF-TRDGRNEVIKVESALSSNDGDIVLGWALDAHGILI 297 Query: 238 LPCWLISTHVKAGRLVKLMPEESFATIDMHLAWSPTRHLPLRIRTVIDALAAALPPLLGV 297 W ++ +VK+GRL ++P+ + D+ + + R+ R R ID L + L + Sbjct: 298 RSEWDLAKYVKSGRLKIVLPDYVLPSADLFVYYPNRRNQSTRARAFIDFLIEHIDMLAAL 357 Query: 298 GVP 300 +P Sbjct: 358 PLP 360 >gi|152982904|ref|YP_001352613.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 314 Score = 159 bits (401), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 156/287 (54%), Gaps = 5/287 (1%) Query: 2 DSFNGIAVFIQAVEAGSFIRAAQRLHLSRSAVGKSIARLEERLGVRLFLRNTRSQSLTEE 61 D F +A+ ++ V+AGSF AA+RL + + V + I LE L R+ R+TR S+TE Sbjct: 3 DRFESMALLVEVVDAGSFSGAARRLGIPLATVSRKIGELETMLKTRVLQRSTRQLSMTEA 62 Query: 62 GRAYYQRCLRALEELESGQALVAEGRCEPTGRVHISSPVLFGRMCVAPVLVELARRWPQL 121 G+AY C R LEE++ + V+ P G + I++P++FGR V PV+ + + +P + Sbjct: 63 GQAYVAACRRILEEVDEAERAVSGEYAAPKGDLVITTPIVFGRKHVMPVVAQFLKAYPDI 122 Query: 122 DITASFTDRRVDLVEEGVDLVLRSGPLPDTSHLVARKMGVQTMMLCASPQYLADHGRPRH 181 ++ D V L+EE VD+ +R G LPD S++VA ++G ++CASP YL +G P+ Sbjct: 123 NVRVVLADHVVHLLEEHVDIAVRVGELPD-SNMVAARIGTINRVMCASPAYLKKNGTPKK 181 Query: 182 FSDLARHHAILYGKTTG---WPIRDEEGKVRMAPVTSRLHFDDLEAIAAATVAGAGLAHL 238 DL++H I + W + E G+ PV SR+ + EA A + G+ + Sbjct: 182 PDDLSKHQCITFDGLMAPKLWQL-CENGREINVPVFSRVVVNTAEAAIEAAESDIGITSV 240 Query: 239 PCWLISTHVKAGRLVKLMPEESFATIDMHLAWSPTRHLPLRIRTVID 285 C+ I+ V+ +L ++ E ++L + LPL++R +D Sbjct: 241 LCYQIAERVRDKQLKMVLREYEREAWPINLVHAGQGILPLKVRAFLD 287 >gi|152981603|ref|YP_001353709.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 159 bits (401), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 94/285 (32%), Positives = 150/285 (52%), Gaps = 7/285 (2%) Query: 1 MDSFNGIAVFIQAVEAGSFIRAAQRLHLSRSAVGKSIARLEERLGVRLFLRNTRSQSLTE 60 MD F + +F++ +E SF +AA+ L L R+ V ++ARLEERLG RL R TR + T Sbjct: 1 MDRFQEMEIFVRIMERRSFTKAAEDLQLPRATVTNAMARLEERLGSRLLNRTTRLVTPTL 60 Query: 61 EGRAYYQRCLRALEELESGQALVAEGRCEPTGRVHISSPVLFGRMCVAPVLVELARRWPQ 120 +G AYY RC+R L ++E A P G + + + P L R+P Sbjct: 61 DGDAYYTRCVRLLTDIEEADG--AFRNTAPKGLLRVGVQGTVAAHFLVPTLPAFFARYPG 118 Query: 121 LDITASFTDRRVDLVEEGVDLVLRSGPLPDTSHLVARKMGVQTMMLCASPQYLADHGRPR 180 +++ +DR VDLV EG+D VLR G P S L+AR++ + + CASP YLA +G+PR Sbjct: 119 MELHMDESDRLVDLVREGIDCVLRGG-TPQDSSLIARRIAMLEQVSCASPAYLARYGQPR 177 Query: 181 HFSDLARHHAILY-GKTTGWPIRDE---EGKVRMAPVTSRLHFDDLEAIAAATVAGAGLA 236 + DL +H A+ Y +G P E G+++ + + + + +AG G+ Sbjct: 178 NIEDLTKHKAVNYISSASGKPFPLEFMVNGRMQSIVLPTAISVTGTKVYTGCALAGLGIV 237 Query: 237 HLPCWLISTHVKAGRLVKLMPEESFATIDMHLAWSPTRHLPLRIR 281 +P + I ++ GRL +++P+ + + + + R L RIR Sbjct: 238 QMPRYHIEQELQDGRLQQILPDTPPPGMPLSVLYPQNRQLSARIR 282 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 588,738 Number of extensions: 21037 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 32 Length of query: 308 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 225 Effective length of database: 914,170 Effective search space: 205688250 Effective search space used: 205688250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)