BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0052.p (298 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 105 3e-24 gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 90 2e-19 gi|152980792|ref|YP_001354199.1| LysR family transcriptional reg... 82 3e-17 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 77 1e-15 gi|152981653|ref|YP_001353379.1| LysR family transcriptional reg... 75 3e-15 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 105 bits (263), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 141/288 (48%), Gaps = 8/288 (2%) Query: 1 MDIRALRYFTETVRLNSFSRAADTLHVTQSTVSKMVRQLEDEVDAPLLIRDGRRLQLTDT 60 M++R LRYF + SF+RA+++LH+TQ T+S ++Q+EDE+ L R GR ++LT Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 61 GRVVYEQGQQILASMQR-LDAEVRDTKALRCGRLEIGIPPMINIL-CTPVLKAFRERHPE 118 G + ++ L + LDA + + + L+ GR+ G+ P+L F + +P Sbjct: 61 GELFQVYAKRALLEVDAGLDA-LNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPG 119 Query: 119 IAIVLKEDTGPQIEQRVASGELEIGMTVLPADPDLELQTLPVARYPMWAVAQAGSFQKNR 178 I I + +IE+R+ G+L G+ P+ + ++ P+ P+ V Sbjct: 120 IKITVLRLRSGEIEERLLDGDLHFGVAYAPSSTE-QINVEPLFTVPLALVVGDHHPLVGS 178 Query: 179 ATLRCAQLDGMPLVLLNNEFGLTRSLRGVFREQEITPRIVAQSAQWDWLVAMALAGMGAA 238 A + +L+ LV+L++E+ + + + ITPRIV + + ++A A Sbjct: 179 AGITLNELNEHELVMLSDEYNSRKMMDAILLANGITPRIVMEMNAIEPILATVRHSSLAT 238 Query: 239 LLPEPFIHRLSSDQLQAVRLVEPEVQWQVAYVT-RGAYLSHAARAWMD 285 +L + + L V L P V V T R ++LS AARA +D Sbjct: 239 ILSANLVDEMPG--LHQVPLT-PTVTHTVGLFTRRNSHLSAAARALVD 283 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 118/248 (47%), Gaps = 6/248 (2%) Query: 1 MDIRALRYFTETVRLNSFSRAADTLHVTQSTVSKMVRQLEDEVDAPLLIRDGRRLQLTDT 60 +++R LR+F F RAA LH+TQ +S+ ++ LE + L R R + LT Sbjct: 3 IELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPA 62 Query: 61 GRVVYEQGQQILASMQRLDAEVRDTKALRCGRLEIGIPPMINILCTP-VLKAFRERHPEI 119 G + + Q+IL L +R + GRL + + P L+ FRE +P++ Sbjct: 63 GIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQV 122 Query: 120 AIVLKEDTGPQIEQRVASGELEIGMTV--LPADPDLELQTLPVARYPM-WAVAQAGSFQK 176 I L+E T +A G +++G+ + LP L+L LPV P+ AV + + Sbjct: 123 EIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVPKGLKAVR 182 Query: 177 NRATLRCAQLDGMPLVLLNNEF--GLTRSLRGVFREQEITPRIVAQSAQWDWLVAMALAG 234 + T+ + +PL++ ++ +R+ +TP I ++ Q ++ + AG Sbjct: 183 GKQTVALQAVAELPLIIFPRRIAPAFHDAILACYRDAGLTPHIGQEAIQMQTIIGLVSAG 242 Query: 235 MGAALLPE 242 MG AL+P+ Sbjct: 243 MGIALVPQ 250 >gi|152980792|ref|YP_001354199.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 82.4 bits (202), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/258 (24%), Positives = 130/258 (50%), Gaps = 3/258 (1%) Query: 1 MDIRALRYFTETVRLNSFSRAADTLHVTQSTVSKMVRQLEDEVDAPLLIRDGRRLQLTDT 60 + +R LR F L+ F+ AA+ LH+TQS +S ++R+LE E++ L R R ++LT+ Sbjct: 3 LTLRQLRAFVAVAELSQFTLAAERLHITQSALSMLIRELEKELELKLFDRHTRMVRLTEH 62 Query: 61 GRVVYEQGQQILASMQRLDAEVRDTKALRCGRLEIGIPPMINI-LCTPVLKAFRERHPEI 119 G +++L+ ++ + R++ + GR+ + ++ + L TP ++ F +RHP I Sbjct: 63 GEEFLLTARRVLSELEVAVMQSRESVNYKRGRVAVACSTVLAVTLLTPFMREFAQRHPGI 122 Query: 120 AIVLKEDTGPQIEQRVASGELEIGMTVLPADPDLELQTLPVARYPMWAVAQAGSFQKNRA 179 ++L++ I++R+ +G+++ + +P+ E+ LP+ + G + Sbjct: 123 KLMLRDVAEESIKKRLLNGDVDFSVGT-QLNPESEISELPIFSDHFVLLMPKGHPLTKQT 181 Query: 180 TLRCAQLDGMPLVLLNNEFGLTRSLRGVFREQEITPRIVAQSAQWDWLVAMALAGMGAAL 239 + + P++ + + L + +IT I +++ ++AM GMG + Sbjct: 182 RIPLQAISQYPVIAMAPSSSIRAVLEAHLKRLDITLNIAYEASFPSTIIAMVRNGMGITI 241 Query: 240 LPEPFIHRLSSDQLQAVR 257 LP H+L+S Q VR Sbjct: 242 LPAN-AHQLTSTQGIVVR 258 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 123/297 (41%), Gaps = 26/297 (8%) Query: 1 MDIRALRYFTETVRLNSFSRAADTLHVTQSTVSKMVRQLEDEVDAPLLIRDGRRLQLTDT 60 M + L+Y R F AA+ V Q T+S +++LEDE+ L R G + +T Sbjct: 17 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 76 Query: 61 GRVVYEQGQQILASMQRLDAEVRDTKALRCGRLEIGIPPMIN-ILCTPVLKAFRERHPEI 119 G + Q +++L + + K G +GI I L P++K ER P++ Sbjct: 77 GAQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERVPQM 136 Query: 120 AIVLKEDTGPQIEQRVASGELEIGMTVLPADPDLELQTLPVARYPMWAVAQAGSFQKNRA 179 +VL+E+ ++ + + GEL+ + LP PD L PV P NR Sbjct: 137 PLVLQENFTVKLLELLRQGELDAAIVALPF-PDQGLLVQPVYDEPFVVAVPKHHKWANRD 195 Query: 180 TLRCAQLDGMPLVLLNNEFGLTRSLRGVFREQ--EITPRIVAQSAQWDWLV--------- 228 ++ L ++LL N FR+Q E+ P + S D + Sbjct: 196 SVSTDDLKSETMLLLGNGH--------CFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLE 247 Query: 229 ---AMALAGMGAALLPEPFIHRLSSDQ--LQAVRLVEPEVQWQVAYVTRGAYLSHAA 280 M +G+G +LP+ I + + L+ + +P +V V R ++ AA Sbjct: 248 TIRHMVASGIGITVLPQASIPDMQAKDGMLRYIPFTQPGPSRRVVLVWRKSFTRGAA 304 >gi|152981653|ref|YP_001353379.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 285 Score = 75.5 bits (184), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 3/145 (2%) Query: 1 MDIRALRYFTETVRLNSFSRAADTLHVTQSTVSKMVRQLEDEVDAPLLIRDGRRLQLTDT 60 +D LR F V SF+RAAD++H+TQSTVS+ +R+LE++ D LL R GR + T Sbjct: 2 LDPILLRSFVAVVDTGSFTRAADSVHLTQSTVSQQIRRLEEQFDCDLLNRSGRYVATTPE 61 Query: 61 GRVVYEQGQQILASMQRLDAEVRDTKALRCGRLEIGIPP-MINILCTPVLKAFRERHPEI 119 G + ++IL M +V T+++ G +++G+P TPVL AF +P I Sbjct: 62 GESLLGYARRILQLMDEAVEQV--TQSVEQGEIQLGVPEDFAAHALTPVLAAFAGNYPGI 119 Query: 120 AIVLKEDTGPQIEQRVASGELEIGM 144 + + + + G+L++ + Sbjct: 120 RLEITSGLSHDLYRMFQQGKLDLAL 144 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 644,126 Number of extensions: 24272 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 23 Length of query: 298 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 215 Effective length of database: 914,170 Effective search space: 196546550 Effective search space used: 196546550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)