BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0048.p (578 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis pro... 348 6e-97 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 343 2e-95 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 341 8e-95 gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis pro... 337 1e-93 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 335 6e-93 >gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 348 bits (892), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 218/391 (55%), Positives = 274/391 (70%), Gaps = 21/391 (5%) Query: 193 IGAGALTVLLAIVAGFAITRSIVNALGGEPAAAAQVAQH---IAAGDLTVPVPLKN-NDR 248 IG +L+ +A F + R+I+ LG ++ H I+AGDLT + +K+ N+ Sbjct: 193 IGGVLFGLLVVAIAAFFLIRAIMQPLG-------EMLNHFSAISAGDLTSRIEVKSRNEM 245 Query: 249 DSLMASLATMREQLTTIVRGIQSSGESISVAAGEIATGNTDLSQRTEQQAASLEETASSM 308 LM L M++ L V ++ +I VA +IA GN DLS RTEQQA+SLEETASSM Sbjct: 246 GKLMGGLQVMQKSLIETVFNVRQGSTAIGVATQQIAAGNLDLSSRTEQQASSLEETASSM 305 Query: 309 EELTSTVRQNSDNARQGNVLAENASTLAVKGGEVVGRVIDTMNEISDSSNRVSDIITVIE 368 EELTSTV+QN+DNARQ N LA +AST+A KGG VV +V+DTM EI+ S+ ++ DII VI+ Sbjct: 306 EELTSTVKQNADNARQANQLAASASTVAEKGGVVVSQVVDTMEEINTSAKKIVDIIGVID 365 Query: 369 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLINLSGERVQ 428 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAK++K LI S ++V+ Sbjct: 366 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVE 425 Query: 429 RGTHLVSEAGQTINEVVQAVRNVTDIMTEISAASLEQTTGIEQVNQALGQMDQVTQQNAA 488 G+ LV+EAG T+ EVV V+ VTDIM+EI+AAS EQ+ GIEQVNQA+ QMDQVTQQNAA Sbjct: 426 IGSKLVAEAGVTMKEVVHGVQQVTDIMSEITAASQEQSAGIEQVNQAISQMDQVTQQNAA 485 Query: 489 LVEQAAAAAQAMSEQATELRSAVGIFKTAGGIAHPVPVARAAAVVKTAPKPAPAAARSLP 548 LVE+AAAAA++++EQA +L AV +FK G VA AA V KTA K A A S P Sbjct: 486 LVEEAAAAAESLNEQAGKLAEAVSVFKLDG-------VAAAAPVKKTASKIAAVA--SSP 536 Query: 549 PKVQPSVNKPAPAPSSSFKKEEADG-DWETF 578 V+ ++ PAP +G DWE F Sbjct: 537 APVKRAIAAPAPVRQKVANGAATNGDDWEEF 567 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 343 bits (879), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 248/594 (41%), Positives = 348/594 (58%), Gaps = 46/594 (7%) Query: 1 MFGSLTVGRKLGLAFLCMVLVSLAGSALSLFNFNKLEAASAMNVHTYEVMGTADNMLVNM 60 F ++ +G +L L F ++ +S+A +A + +L A SA+ E+ + M+ + Sbjct: 3 FFSNMKIGARLMLGFGVVLALSIAIAADGI---RQLHAVSAITRSMLELPIAKERMVSDW 59 Query: 61 VNIETG----IRGYVASGNEA---FLAPYLEGRKEFRKAFDEAKKLTSD-NPAQQKRL-A 111 I G S + A F A + + +++ + +KL N Q+K L A Sbjct: 60 AAITKASIARTIGVAKSADPALAQFSAKF--AADDSKQSMEIIQKLEPLLNTDQEKELYA 117 Query: 112 AMLELTNKIEEVDQTLIKLRKEANASASTQALQAYFGAAHDKVHMDRFRALQAEFNQAEE 171 +L++ + ++KL+ E + + + F A D F+ EF + E Sbjct: 118 KILDVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADS-----FKNHFTEFVELER 172 Query: 172 SLLKVRGEQVRALSSSTLSVLIGAGALTVLLAIVAGFAITRSIVNALGGEPAAAAQVAQH 231 + Q+ + +++ L+ A+ + I + +T I L A A+ Sbjct: 173 KQMDAGTAQLSDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPL----KTAVDAARR 228 Query: 232 IAAGDLTVPVPLKNNDR-DSLMASLATMREQLTTIVRGIQSSGESISVAAGEIATGNTDL 290 +A GDLT + ++ D L+A+L M + L IV ++ E+I+ A+ EIA GN DL Sbjct: 229 VAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDL 288 Query: 291 SQRTEQQAASLEETASSMEELTSTVRQNSDNARQGNVLAENASTLAVKGGEVVGRVIDTM 350 S RTEQQA+SLEETASSMEELTSTV+QN+DNARQ N LA +AS +A+KGG+VV +V+ TM Sbjct: 289 SSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTM 348 Query: 351 NEISDSSNRVSDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 410 + I++SS ++ DII+VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA Sbjct: 349 SSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 408 Query: 411 AAAKDVKDLINLSGERVQRGTHLVSEAGQTINEVVQAVRNVTDIMTEISAASLEQTTGIE 470 +AAK++K LI S +V G LV+EAG T++E+V ++R VTDIM EI+AAS EQ+ GIE Sbjct: 409 SAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIE 468 Query: 471 QVNQALGQMDQVTQQNAALVEQAAAAAQAMSEQATELRSAVGIFKTAGGIAHPVPVARAA 530 Q+NQA+GQMD VTQQNA+LVE+AAAAA++M +QA +L VG FK P RA+ Sbjct: 469 QINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLDNAQEANPP--RAS 526 Query: 531 AVVKTAPKPAP-----AAARSLPPKVQPSVNKPAPAPSSSFKKEEADGD-WETF 578 V + APKPA A A LP Q N PA GD WE F Sbjct: 527 GVTRLAPKPAAGSAGLAVAAPLP---QRRANGALPA-----------GDEWEQF 566 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 341 bits (874), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 211/399 (52%), Positives = 278/399 (69%), Gaps = 15/399 (3%) Query: 181 VRALSSSTLSVLIGAGALTVLLAIVAGFAITRSIVNALGGEPAAAAQVAQHIAAGDLTVP 240 V AL +S ++LI G++ ++L+ + ++RSI L A VA+ +A+GDL Sbjct: 183 VDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLD----YAVSVARTVASGDLRNK 238 Query: 241 VPLKNNDRD-SLMASLATMREQLTTIVRGIQSSGESISVAAGEIATGNTDLSQRTEQQAA 299 + +ND L+ +L M + L V +++ E+I+ A+ +IA GN DLS RTE+QA+ Sbjct: 239 IQSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEEQAS 298 Query: 300 SLEETASSMEELTSTVRQNSDNARQGNVLAENASTLAVKGGEVVGRVIDTMNEISDSSNR 359 SLEETASSMEELTSTV+QN+DNARQ N LA +AS +A KGGEVV RV+DTM +I+ S+ + Sbjct: 299 SLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINASAKK 358 Query: 360 VSDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDL 419 + DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAK++K L Sbjct: 359 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTL 418 Query: 420 INLSGERVQRGTHLVSEAGQTINEVVQAVRNVTDIMTEISAASLEQTTGIEQVNQALGQM 479 I S ++V+ G+ LV EAG T++EVVQ+V++VTDIM+EI AAS EQ+ GIEQVNQA+GQM Sbjct: 419 IGDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQM 478 Query: 480 DQVTQQNAALVEQAAAAAQAMSEQATELRSAVGIFKTAGGIAHPVPVARAAAVVKTAPKP 539 DQVTQQNAALVE+AAAAA++++EQA +L AV +FK A P + + A Sbjct: 479 DQVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKLDSITAAAAPSKKVNVGTRVASHG 538 Query: 540 APAAARSLPPKVQPSVNKPAPAPSSSFKKEEADGDWETF 578 AP A R++ V ++ A DWE F Sbjct: 539 AP-ANRAIAVPVTKKISNGAATGGD---------DWEEF 567 >gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 337 bits (863), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 236/512 (46%), Positives = 307/512 (59%), Gaps = 53/512 (10%) Query: 70 YVASGNEAFLAPYLEGRKEFRKAFDEAKKLTSDNPAQQKRLAAMLELTNKIEEVDQTLIK 129 Y G +A + + E R ++ +F + KL +DN Sbjct: 107 YTDKG-KALMQEFKEARGKYVASFGKVGKLVADNH------------------------- 140 Query: 130 LRKEANASASTQALQAYFGAAHDKVHMDRFRALQAEFNQAEESLLKVRGEQVRALSSSTL 189 R EA ++ L A +D + + A+ ++ +++ RG + + Sbjct: 141 -RDEARQILLSETLPA----------LDVVQGIVAQLTAVQKKMVEERGATAAGHIDAAI 189 Query: 190 SVLIGAGALTVLLAIVAGFAITRSIVNALGGEPAAAAQVAQHIAAGDLTVPVPLKNNDRD 249 +++ GAL + I + IT SI L A ++AQ +AAGDLT + K D Sbjct: 190 QMMMVLGALAAVGGIALAYWITHSITKPLH----EAVKIAQTVAAGDLTSVIEAKYKDET 245 Query: 250 S-LMASLATMREQLTTIVRGIQSSGESISVAAGEIATGNTDLSQRTEQQAASLEETASSM 308 L+ +L M L IV ++ S E+I++A+ +IA+GN DLS RTE+QA+SLEETASSM Sbjct: 246 GQLLRALKDMNGSLIRIVGEVRHSTEAIAIASTQIASGNMDLSSRTEEQASSLEETASSM 305 Query: 309 EELTSTVRQNSDNARQGNVLAENASTLAVKGGEVVGRVIDTMNEISDSSNRVSDIITVIE 368 EELT TVRQN+DNARQ N LA AS++A KGG+VV +V+DTM I+DS+ +++DII VI+ Sbjct: 306 EELTGTVRQNADNARQANQLALTASSVASKGGDVVSQVVDTMGSINDSAKKIADIIGVID 365 Query: 369 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLINLSGERVQ 428 GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSAAAAK++K LI S ++V Sbjct: 366 GIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKTLIGDSVQKVN 425 Query: 429 RGTHLVSEAGQTINEVVQAVRNVTDIMTEISAASLEQTTGIEQVNQALGQMDQVTQQNAA 488 G+ LV +AG T+ EVV +VR VTDIM EI+AAS EQTTGIEQ+NQA+ QMD VTQQNAA Sbjct: 426 AGSRLVDDAGSTMQEVVASVRRVTDIMGEITAASQEQTTGIEQINQAVIQMDSVTQQNAA 485 Query: 489 LVEQAAAAAQAMSEQATELRSAVGIFKTAGGIAHPVPVARAAAVVKTAPKPAPAAARSLP 548 LVEQAAAAA ++ QA L VG+FK A V A A V P+ A A Sbjct: 486 LVEQAAAAAASLQHQAGSLAQVVGVFKLHHSEALHVLPATPKATVSVLPQKAAA------ 539 Query: 549 PKVQPSVNKPAPAPSSSFKKEEA-DGD-WETF 578 VQ + NK P P + E A GD WE F Sbjct: 540 --VQIA-NKAVPPPKEGKRPELAVAGDEWEQF 568 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 335 bits (858), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 216/414 (52%), Positives = 287/414 (69%), Gaps = 15/414 (3%) Query: 170 EESLLKVRGEQVRALSSSTLSVLIGAGALTVLLAIVAGFAI--TRSIVNALGGEPAAAAQ 227 + L+K G + A +S T +LIG ++ +L I A FA+ TRSI L + A Sbjct: 168 QNELMKKSGAEANAKASQT-QLLIGIFSIIAVL-IAAVFAVLATRSITRPL----SQAVV 221 Query: 228 VAQHIAAGDLTVPVPLKNNDRD-SLMASLATMREQLTTIVRGIQSSGESISVAAGEIATG 286 +A+ +A GDLT + +++ D L+ +L M E L IV ++ ++I+ A+ +IATG Sbjct: 222 LARKVADGDLTGSIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATG 281 Query: 287 NTDLSQRTEQQAASLEETASSMEELTSTVRQNSDNARQGNVLAENASTLAVKGGEVVGRV 346 N DLS RTEQQA+SLEETASSMEELTSTV+QN++NARQ N LA +AS +AV+GG VV +V Sbjct: 282 NLDLSSRTEQQASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKV 341 Query: 347 IDTMNEISDSSNRVSDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 406 +DTM EI+DS+ ++ DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LA Sbjct: 342 VDTMGEINDSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLA 401 Query: 407 QRSAAAAKDVKDLINLSGERVQRGTHLVSEAGQTINEVVQAVRNVTDIMTEISAASLEQT 466 QRSA+AAK++K+LI S ++V G+ LV +AG T+ EVV++V+ VTDIM+EI+AAS EQT Sbjct: 402 QRSASAAKEIKELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQT 461 Query: 467 TGIEQVNQALGQMDQVTQQNAALVEQAAAAAQAMSEQATELRSAVGIFKTAGGIAHPVPV 526 GIEQ+NQA+ QMDQVTQQNAALVE+AAAAA+++ QA+ L VG+FK G H V Sbjct: 462 DGIEQINQAVMQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLDG---HGTTV 518 Query: 527 ARAAAVVKTAPKPAPAAARSLPPKVQPSVNKPAPAPSSSFKKE--EADGDWETF 578 A TAP+ A ++ KV+ + K + + A +WE F Sbjct: 519 VNAVPTY-TAPEQPKVAGKAALHKVKTTQQKIEDKEFARVPRNVVPAGDEWEQF 571 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.125 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 939,955 Number of extensions: 30076 Number of successful extensions: 281 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 190 Number of HSP's successfully gapped: 21 Length of query: 578 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 490 Effective length of database: 895,685 Effective search space: 438885650 Effective search space used: 438885650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)