BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0047.p (324 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981643|ref|YP_001352264.1| LysR family transcriptional reg... 350 8e-98 gi|152983030|ref|YP_001352585.1| LysR family transcriptional reg... 177 5e-46 gi|152982683|ref|YP_001354316.1| LysR family transcriptional reg... 145 4e-36 gi|152982904|ref|YP_001352613.1| LysR family transcriptional reg... 142 3e-35 gi|152981625|ref|YP_001354995.1| LysR family transcriptional reg... 138 4e-34 >gi|152981643|ref|YP_001352264.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 321 Score = 350 bits (898), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 171/294 (58%), Positives = 218/294 (74%) Query: 17 TDRIELIQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTE 76 DRIEL+QTFVRIVEAGSLSAAA QL T+QPT+SRRLQ LERSLG+RLLQRSTH MK+TE Sbjct: 9 VDRIELMQTFVRIVEAGSLSAAAEQLKTSQPTVSRRLQALERSLGLRLLQRSTHVMKLTE 68 Query: 77 DGERCYERAKELLAGWDEFENELRGARQHAEGSLRVAVPHAFGQQQLIGPLAQFMRAHPR 136 DGERC+ RAKELL W E +LRG + EG+LRV VPHAFGQ+ LI PLA ++ +PR Sbjct: 69 DGERCFARAKELLDNWKAMEADLRGTQDEPEGTLRVLVPHAFGQEHLIAPLADYLGRYPR 128 Query: 137 ITVEWLLHDRAADFISQGIDCAIQVGEVNDSSVVAIHLAEVPRMTVVAPALLQGRPLPRR 196 ++VEW+LHDR DFI++GIDCAIQVG V + SVVAI L +VPR+ V +P L++ Sbjct: 129 VSVEWMLHDRHPDFIAEGIDCAIQVGVVVNPSVVAIKLFDVPRIIVASPQLVKAHASSLT 188 Query: 197 PSDLATFPWIAIPAFYRRDITLTHASTGEQRQVAFRPQLVTDSLYALRNCAIEGMGVAVG 256 +L T PW+A FYR ++ LT S G + + +P++ TDSLYALR G+G + Sbjct: 189 VDELHTLPWLAFRTFYREEVVLTRQSDGAEHAFSIQPRMSTDSLYALRTAVATGLGAGIV 248 Query: 257 SSWVLAEDVATGRLVQLLPEWEPAPLPVSLLYPYARFYPARLRHFIDTMKEAMP 310 S W++A+D+A GRL+ L+P+W PLPV L+YP+AR+YPARLR F+DTM+ P Sbjct: 249 SGWLVADDIAQGRLLHLVPDWRAPPLPVYLVYPHARYYPARLRLFLDTMRAIKP 302 >gi|152983030|ref|YP_001352585.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 177 bits (450), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 98/304 (32%), Positives = 169/304 (55%), Gaps = 10/304 (3%) Query: 18 DRIELIQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTED 77 D+++ ++ FVR+VEAGS SA A + TTQ +S+++ LER LGVRLL R+T ++ +TE+ Sbjct: 2 DKLQAMKVFVRVVEAGSFSAVAHESDTTQSAVSKQVAALERELGVRLLTRTTRSLALTEE 61 Query: 78 GERCYERAKELLAGWDEFENELRGARQHAEGSLRVAVPHAFGQQQLIGPLAQFMRAHPRI 137 GER +E+ + L+A E E EL+ Q G LR+A FG+ +L+ + F+ H + Sbjct: 62 GERYFEQLRRLIAEISEAEGELQRGEQQLTGWLRIAASVGFGRLKLMPLVQSFLAEHRGV 121 Query: 138 TVEWLLHDRAADFISQGIDCAIQVGEVNDSSVVAIHLAEVPRMTVVAPALL----QGRPL 193 ++ LHD D + QGID A+++G++ DSS++A + RM + + L +G Sbjct: 122 KIDLRLHDGFIDLVEQGIDVAVRLGDLPDSSLIARRVGTASRMLMAHRSYLRSLPKGTKT 181 Query: 194 PRRPSDLATFPWIAIPAFYRRDITLTHA------STGEQRQVAFRPQLVTDSLYALRNCA 247 P P DL+ I R+ A + G R V L T+S +R Sbjct: 182 PITPDDLSEHNCIVYTELAMRNTWNFKAGPGAPDAIGTTRIVRVEGNLQTNSSEVIRASI 241 Query: 248 IEGMGVAVGSSWVLAEDVATGRLVQLLPEWEPAPLPVSLLYPYARFYPARLRHFIDTMKE 307 + GMG+ +W+ +++A+G + ++LP+WE P+P+ L+ P R + A+++ F + + + Sbjct: 242 LGGMGITYSPTWLFEKELASGEVQRILPDWETLPIPIQLVSPRERRHSAKVKAFAEHVGQ 301 Query: 308 AMPA 311 + + Sbjct: 302 KLSS 305 >gi|152982683|ref|YP_001354316.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 299 Score = 145 bits (366), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 160/286 (55%), Gaps = 3/286 (1%) Query: 18 DRIELIQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTED 77 DR++ ++ F+ I+++GSL AA+ +L + P I+R L TLE +G RL++R+T + TE Sbjct: 2 DRLDELEIFIAILDSGSLVAASRKLRRSPPAITRALGTLEERIGTRLIERTTRHLVATEA 61 Query: 78 GERCYERAKELLAGWDEFENELRGARQHAEGSLRVAVPHAFGQQQLIGPLAQFMRAHPRI 137 G ++A+ LLA +++ E A G+L+V P FG++ + + ++ +P + Sbjct: 62 GLHLAQQARRLLADYEQTVQE--DASAPLRGTLKVTAPVVFGRRHVAPIVNSYLDQYPEM 119 Query: 138 TVEWLLHDRAADFISQGIDCAIQVGEVNDSSVVAIHLAEVPRMTVVAPALLQGRPLPRRP 197 VE + +DR D I +GID +++G + D+S+VA + +V + V +P ++ R P+ Sbjct: 120 RVELITNDRNLDLIEEGIDVGVRIGSLADTSMVARRVGQVQSVLVASPDYIERRGEPKSI 179 Query: 198 SDLATFPWIAIPAFYRRDITLTHASTGEQRQVAFRPQLVTDSLYALRNCAIEGMGVAVGS 257 +D+A I A + G ++ VA P+L+ + + A+ A G G+A Sbjct: 180 ADIAHHDVI-FTAIREKAPEWRFRHNGREQIVALTPRLIVNEIDAVLLAAKAGRGLARVL 238 Query: 258 SWVLAEDVATGRLVQLLPEWEPAPLPVSLLYPYARFYPARLRHFID 303 S+ +A+++ G L+++LP+ + LPV L+ P AR + R F+D Sbjct: 239 SYQVADELQAGTLLRVLPKLDAPDLPVQLIVPSARLMAPKSRAFLD 284 >gi|152982904|ref|YP_001352613.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 314 Score = 142 bits (357), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 87/293 (29%), Positives = 150/293 (51%), Gaps = 11/293 (3%) Query: 16 LTDRIELIQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMT 75 +TDR E + V +V+AGS S AA +L T+SR++ LE L R+LQRST + MT Sbjct: 1 MTDRFESMALLVEVVDAGSFSGAARRLGIPLATVSRKIGELETMLKTRVLQRSTRQLSMT 60 Query: 76 EDGERCYERAKELLAGWDEFENELRGARQHAEGSLRVAVPHAFGQQQLIGPLAQFMRAHP 135 E G+ + +L DE E + G +G L + P FG++ ++ +AQF++A+P Sbjct: 61 EAGQAYVAACRRILEEVDEAERAVSGEYAAPKGDLVITTPIVFGRKHVMPVVAQFLKAYP 120 Query: 136 RITVEWLLHDRAADFISQGIDCAIQVGEVNDSSVVAIHLAEVPRMTVVAPALLQGRPLPR 195 I V +L D + + +D A++VGE+ DS++VA + + R+ +PA L+ P+ Sbjct: 121 DINVRVVLADHVVHLLEEHVDIAVRVGELPDSNMVAARIGTINRVMCASPAYLKKNGTPK 180 Query: 196 RPSDLA-----TFPWIAIPAFYRRDITLTHASTGEQRQVAFRPQLVTDSLYALRNCAIEG 250 +P DL+ TF + P ++ G + V ++V ++ A A Sbjct: 181 KPDDLSKHQCITFDGLMAPKLWQL------CENGREINVPVFSRVVVNTAEAAIEAAESD 234 Query: 251 MGVAVGSSWVLAEDVATGRLVQLLPEWEPAPLPVSLLYPYARFYPARLRHFID 303 +G+ + +AE V +L +L E+E P++L++ P ++R F+D Sbjct: 235 IGITSVLCYQIAERVRDKQLKMVLREYEREAWPINLVHAGQGILPLKVRAFLD 287 >gi|152981625|ref|YP_001354995.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 138 bits (348), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 87/289 (30%), Positives = 145/289 (50%), Gaps = 2/289 (0%) Query: 26 FVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTEDGERCYERA 85 FV++V+ G + A L + +SRR+ LE LGVRL+QR+T +TE G+ YE Sbjct: 10 FVQVVDHGGFAPAGRALGIPKSKLSRRIALLEERLGVRLIQRTTRQFSVTEIGQTYYEHC 69 Query: 86 KELLAGWDEFENELRGARQHAEGSLRVAVPHAFGQQQLIGPLAQFMRAHPRITVEWLLHD 145 K +L + ++ + R G +R++ P + LA FM HP +TV + Sbjct: 70 KAMLVEAEAAQDVIDVTRAEPRGVVRLSCPITLLHAHVSSMLADFMALHPHVTVHLEATN 129 Query: 146 RAADFISQGIDCAIQVG--EVNDSSVVAIHLAEVPRMTVVAPALLQGRPLPRRPSDLATF 203 R D +++ +D AI+V + DS +V L++ + V +PAL LP+ P+D+A + Sbjct: 130 RRVDVVAEAMDIAIRVRPPPIQDSDLVMRVLSDRGQCLVASPALFNKHALPQTPADIAEW 189 Query: 204 PWIAIPAFYRRDITLTHASTGEQRQVAFRPQLVTDSLYALRNCAIEGMGVAVGSSWVLAE 263 P +A+ + + G + P+ VT + ALR+ A+ G+G+ +L E Sbjct: 190 PSLALGTPQQTHVWNLFGPDGAHVSLHHHPRFVTGDMMALRDAALAGVGIVQLPRMMLRE 249 Query: 264 DVATGRLVQLLPEWEPAPLPVSLLYPYARFYPARLRHFIDTMKEAMPAV 312 +A G L+ LLP+W P V +++P R +R ID + E A+ Sbjct: 250 QLAAGTLLSLLPDWAPRREIVHVVFPSRRGVLPSVRALIDYLAERFQAL 298 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 735,812 Number of extensions: 29361 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 28 Length of query: 324 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 241 Effective length of database: 914,170 Effective search space: 220314970 Effective search space used: 220314970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)