BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0045.p
         (212 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981150|ref|YP_001353311.1| ABC-type multidrug transport sy...    55   4e-09

>gi|152981150|ref|YP_001353311.1| ABC-type multidrug transport
           system, ATPase component [Janthinobacterium sp.
           Marseille]
          Length = 348

 Score = 54.7 bits (130), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 3/130 (2%)

Query: 42  GGDGRGKTTLLNLLGGFMPARDGVLELDGLRLDSDGEAYRRRVFFI--DPRSEAYDQMTP 99
           G +G GKTTL++++ G +    G +  DG  +  D  A R ++  +  +  ++A++ +  
Sbjct: 78  GPNGAGKTTLISIICGIVNPSSGTVLADGHDIVQDYRAARTKIGLVPQELSTDAFETVWA 137

Query: 100 PQVFAALAERYPRFEHGLLPALIEGLSLTPHLEKKLFMLSTGSKRKVYLAAAFAAGATLT 159
              F+      P+ +H  +  ++  LSL    + K+F LS G KR+V +A A +    + 
Sbjct: 138 TVNFSRGIFGKPK-DHAHIEKVLRSLSLWEKKDSKIFALSGGMKRRVMIAKALSHEPQIL 196

Query: 160 LLDDPYASLD 169
            LD+P A +D
Sbjct: 197 FLDEPTAGVD 206


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 467,764
Number of extensions: 18632
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 4
Length of query: 212
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 133
Effective length of database: 928,958
Effective search space: 123551414
Effective search space used: 123551414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)