BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0043.p (534 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 492 e-140 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 479 e-136 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 477 e-136 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 438 e-124 gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis pro... 427 e-121 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 492 bits (1266), Expect = e-140, Method: Compositional matrix adjust. Identities = 284/534 (53%), Positives = 390/534 (73%), Gaps = 4/534 (0%) Query: 3 LSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNTQMKDVIHDKYPKTVVAGDIVDQL 62 + N+ I RL L FG +++L++ +A R+G LN + +V D+YPKTV+A + D L Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 63 NLIARSVRNILLLKKDAQIKSEYDRITGADKAVRDDLAQLDQLLTDADSRASLDKLRSAL 122 N IAR++RN LL+ + A I++E +I A ++ + L +L++ + R ++ L++ Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADR 120 Query: 123 AAYMDKRDKVLNMMQQGGKEGAIDVLIDEVRPVQSATMNAADALIKLQQDMMKTAGDEVE 182 + ++ +D + + G K+ A+ +L EVRP Q + + + D LI Q ++MK +G E Sbjct: 121 SKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEAN 180 Query: 183 NNYVQARTLLLVLTALGLAAAATIALMITRSITAPLDRAVRVAETVAAGDLTSTIDDSGR 242 Q + L+ + + + + AA A++ TRSIT PL +AV +A VA GDLT +I + Sbjct: 181 AKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESK 240 Query: 243 DETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAASLEETA 302 DET LL+ALK MN+ LL IV+QVR+ TDTIA+AS +IA GNLDLSSRTE+QA+SLEETA Sbjct: 241 DETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETA 300 Query: 303 SSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVQTMGAIDASSKKIVDIIG 362 SSME+LT+TVKQNA +A Q+NQLA SAS++A +GG VVS+VV TMG I+ S+KKIVDIIG Sbjct: 301 SSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIG 360 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAQEIKSLIGDSVA 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA+AA+EIK LIGDSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVD 420 Query: 423 RVSDGSKLVEQAGLTIQEVVQSVQRVGAVVNEISAAGQEQSAGIEQVNLAIVQMDQVTQQ 482 +VS GS+LV+ AG T++EVV+SV+RV +++EI+AA QEQ+ GIEQ+N A++QMDQVTQQ Sbjct: 421 KVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 483 NAALVEQAAAAAQSLQDQAAQLARLVSVFKLEGREPE----LAVITAPMKARLA 532 NAALVE+AAAAA+SLQ QA+ L+++V VFKL+G + TAP + ++A Sbjct: 481 NAALVEEAAAAAESLQGQASHLSQVVGVFKLDGHGTTVVNAVPTYTAPEQPKVA 534 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 479 bits (1232), Expect = e-136, Method: Compositional matrix adjust. Identities = 282/534 (52%), Positives = 365/534 (68%), Gaps = 12/534 (2%) Query: 3 LSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNTQMKDVIHDKYPKTVVAGDIVDQL 62 ++N+ IR +L L FG++ L++ + +LGQLN +K + D+YPKT++A + ++ Sbjct: 4 IANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIEV 63 Query: 63 NLIARSVRNILLLKKDAQIKSEYDRITGADKAVRDDLAQLDQLL-TDADSRASLDKLRSA 121 N IA ++R+I+L A+IK +DK + + L QL + T+ D+R + +A Sbjct: 64 NKIALNLRDIMLSSDPAKIKQLVSDTQASDKKMNEGLEQLRAVAQTEEDNR----YVSAA 119 Query: 122 LAA---YMDKRDKVLNMMQQGGKEGAIDVLIDEV-RPVQSATMNAADALIKLQQDMMKTA 177 + A Y+ RD +L + Q G K +D+V PVQ A DA+ Q +M A Sbjct: 120 IVARDQYVPARDTLLQLAQDG-KTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMNVA 178 Query: 178 GDEVENNYVQARTLLLVLTALGLAAAATIALMITRSITAPLDRAVRVAETVAAGDLTSTI 237 GD VQART++ +L + L + + +TRSIT PL+ AV VA VA GDL+ + Sbjct: 179 GDAASATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLNTAVGVARRVAQGDLSGPV 238 Query: 238 DDSGRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAAS 297 +E L+ ALK MND L IV+QVR T TIA AS EIARGN+DLSSRTE+QA+S Sbjct: 239 FVKTTNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQASS 298 Query: 298 LEETASSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVQTMGAIDASSKKI 357 LEETAS+ME+LT+TV++NA +A QANQLA SA+ +ARQGG VV +V+ TM AI+ SSKKI Sbjct: 299 LEETASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKI 358 Query: 358 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAQEIKSLI 417 DI GVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSATAA EIK+LI Sbjct: 359 ADITGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAMEIKALI 418 Query: 418 GDSVARVSDGSKLVEQAGLTIQEVVQSVQRVGAVVNEISAAGQEQSAGIEQVNLAIVQMD 477 DSVA+V +GSKLV+QAGLTI EVV SV + +V IS A QEQSAGIEQV AIVQ+D Sbjct: 419 DDSVAKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAIVQID 478 Query: 478 QVTQQNAALVEQAAAAAQSLQDQAAQLARLVSVFKLEGREPELAVITAPMKARL 531 + TQQNAALVEQ+AAAAQSL++QA QL +LVS+FKL+ +A AP +L Sbjct: 479 EGTQQNAALVEQSAAAAQSLREQADQLMQLVSIFKLD--RQSVATSAAPAAGKL 530 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 477 bits (1227), Expect = e-136, Method: Compositional matrix adjust. Identities = 281/512 (54%), Positives = 373/512 (72%) Query: 3 LSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNTQMKDVIHDKYPKTVVAGDIVDQL 62 + N+ I RL L FG ++ +++ +A RL +L+ + V +D+YPKTV A I D L Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 63 NLIARSVRNILLLKKDAQIKSEYDRITGADKAVRDDLAQLDQLLTDADSRASLDKLRSAL 122 N AR++RN LL+ AQIK E D I + + L +LD+ + R + L A Sbjct: 61 NETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDAR 120 Query: 123 AAYMDKRDKVLNMMQQGGKEGAIDVLIDEVRPVQSATMNAADALIKLQQDMMKTAGDEVE 182 + +DK + ++ QG + A +L EVRP Q M D L++ Q ++M AG++ Sbjct: 121 GRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAH 180 Query: 183 NNYVQARTLLLVLTALGLAAAATIALMITRSITAPLDRAVRVAETVAAGDLTSTIDDSGR 242 A+ L+ +L+ + + +A + + TRSIT PL +AV +A VA GDLT TI + + Sbjct: 181 EVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSK 240 Query: 243 DETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAASLEETA 302 DET LL+AL+ MN+ L+ IV+QVR+ TDTIATASS+IA GNLDLSSRTEEQA+SLEETA Sbjct: 241 DETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETA 300 Query: 303 SSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVQTMGAIDASSKKIVDIIG 362 SSME+LT+TVKQNA +A Q+NQLA +AS++A +GG VVSQVV+TMG+I+ S+ KIVDIIG Sbjct: 301 SSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIG 360 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAQEIKSLIGDSVA 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA+AA+EIK+LI DSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVE 420 Query: 423 RVSDGSKLVEQAGLTIQEVVQSVQRVGAVVNEISAAGQEQSAGIEQVNLAIVQMDQVTQQ 482 +V++GS+LV AG T+ EVV+SV+RV ++ EI+AA QEQ+ GIEQ+N A++QMDQVTQQ Sbjct: 421 KVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 483 NAALVEQAAAAAQSLQDQAAQLARLVSVFKLE 514 NAALVE+AAAAA+SLQDQA L+++VSVFKL+ Sbjct: 481 NAALVEEAAAAAESLQDQANNLSQVVSVFKLD 512 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 438 bits (1126), Expect = e-124, Method: Compositional matrix adjust. Identities = 273/522 (52%), Positives = 360/522 (68%), Gaps = 14/522 (2%) Query: 1 MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARL---GQLNTQMKDVIH-DKYPKTVVAG 56 M++SN+ I +RL L F ++++LM +M G+ RL Q M++ H ++ G Sbjct: 1 MKISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHMEEAAHKERLTHEWYLG 60 Query: 57 DIVDQLNLIARSVRNILLLKKDAQIKSEYDR-ITGADKAVRDDLAQLDQLLTDADSRASL 115 ++ + + AR N DA+I+ ++ + + + + ++ L+ + + + Sbjct: 61 NVANAIRTAARIRSN------DAEIQKQFQKEMELQSQEISKLQNEIVALIHSEEGKKLM 114 Query: 116 DKLRSALAAYMDKRDKVLNM---MQQGGKEGAIDVLIDEVRPVQSATMNAADALIKLQQD 172 + AYMD R V + A ++ ++ P +A + A++ QQ Sbjct: 115 SVVGEKRTAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSFQQV 174 Query: 173 MMKTAGDEVENNYVQARTLLLVLTALGLAAAATIALMITRSITAPLDRAVRVAETVAAGD 232 + + A +V+ Y RT+L+ L ++ L +A +A +++RSIT PLD AV VA TVA+GD Sbjct: 175 IFQRAKADVDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYAVSVARTVASGD 234 Query: 233 LTSTIDDSGRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTE 292 L + I S DET LLRAL+ MND L+ VSQVR +TIATAS++IA GNLDLSSRTE Sbjct: 235 LRNKIQSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTE 294 Query: 293 EQAASLEETASSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVQTMGAIDA 352 EQA+SLEETASSME+LT+TVKQNA +A QANQLA SAS +A +GGEVVS+VV TM I+A Sbjct: 295 EQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINA 354 Query: 353 SSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAQE 412 S+KKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA AA+E Sbjct: 355 SAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKE 414 Query: 413 IKSLIGDSVARVSDGSKLVEQAGLTIQEVVQSVQRVGAVVNEISAAGQEQSAGIEQVNLA 472 IK+LIGDSV +V GSKLV +AG+T+ EVVQSV+ V +++EI AA QEQSAGIEQVN A Sbjct: 415 IKTLIGDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQA 474 Query: 473 IVQMDQVTQQNAALVEQAAAAAQSLQDQAAQLARLVSVFKLE 514 I QMDQVTQQNAALVE+AAAAA+SL +QAA+LA VSVFKL+ Sbjct: 475 IGQMDQVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKLD 516 >gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 427 bits (1099), Expect = e-121, Method: Compositional matrix adjust. Identities = 272/542 (50%), Positives = 358/542 (66%), Gaps = 18/542 (3%) Query: 1 MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARL---GQLNTQM--KDVIHDKYPKTVVA 55 M + NV I RL +GFG + +LM + + R G++N QM D + + T+ Sbjct: 1 MNILNVRIGARLAMGFGAIFILMATLIVLALLRFNSIGEINHQMVDSDWVKAEAAATI-- 58 Query: 56 GDIVDQLNLIARSVRNILLLKKDAQIKSEYDRITGADKAVRDDLAQLDQLLTDADSRASL 115 D+ + N AR +L+ + A++ + + I KA+ + + LD+L+ +A + Sbjct: 59 -DVTTRAN--ARRNMELLMETESAKVAALFADIAKNKKAIDEAVVVLDKLIYTDKGKALM 115 Query: 116 DKLRSALAAYMDKRDKVLNMMQQGGKEGAIDVLIDEVRPVQSATMNAADALIKLQQDMMK 175 + + A Y+ KV ++ ++ A +L+ E P L +Q+ M++ Sbjct: 116 QEFKEARGKYVASFGKVGKLVADNHRDEARQILLSETLPALDVVQGIVAQLTAVQKKMVE 175 Query: 176 TAGDEVENNYVQARTLLLVLTALGLAAAATIALMITRSITAPLDRAVRVAETVAAGDLTS 235 G + A +++VL AL +A IT SIT PL AV++A+TVAAGDLTS Sbjct: 176 ERGATAAGHIDAAIQMMMVLGALAAVGGIALAYWITHSITKPLHEAVKIAQTVAAGDLTS 235 Query: 236 TIDDSGRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQA 295 I+ +DET LLRALK MN L+ IV +VR ST+ IA AS++IA GN+DLSSRTEEQA Sbjct: 236 VIEAKYKDETGQLLRALKDMNGSLIRIVGEVRHSTEAIAIASTQIASGNMDLSSRTEEQA 295 Query: 296 ASLEETASSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVQTMGAIDASSK 355 +SLEETASSME+LT TV+QNA +A QANQLA +AS +A +GG+VVSQVV TMG+I+ S+K Sbjct: 296 SSLEETASSMEELTGTVRQNADNARQANQLALTASSVASKGGDVVSQVVDTMGSINDSAK 355 Query: 356 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAQEIKS 415 KI DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AA+EIK+ Sbjct: 356 KIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKT 415 Query: 416 LIGDSVARVSDGSKLVEQAGLTIQEVVQSVQRVGAVVNEISAAGQEQSAGIEQVNLAIVQ 475 LIGDSV +V+ GS+LV+ AG T+QEVV SV+RV ++ EI+AA QEQ+ GIEQ+N A++Q Sbjct: 416 LIGDSVQKVNAGSRLVDDAGSTMQEVVASVRRVTDIMGEITAASQEQTTGIEQINQAVIQ 475 Query: 476 MDQVTQQNAALVEQAAAAAQSLQDQAAQLARLVSVFKLEGRE--------PELAVITAPM 527 MD VTQQNAALVEQAAAAA SLQ QA LA++V VFKL E P+ V P Sbjct: 476 MDSVTQQNAALVEQAAAAAASLQHQAGSLAQVVGVFKLHHSEALHVLPATPKATVSVLPQ 535 Query: 528 KA 529 KA Sbjct: 536 KA 537 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.127 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 721,151 Number of extensions: 20034 Number of successful extensions: 217 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 22 Length of query: 534 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 446 Effective length of database: 895,685 Effective search space: 399475510 Effective search space used: 399475510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)