BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0035.p (462 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Jant... 455 e-129 gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing... 242 3e-65 gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing... 236 2e-63 gi|152982803|ref|YP_001351714.1| two-component system sensor pro... 184 1e-47 gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcr... 124 1e-29 >gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Janthinobacterium sp. Marseille] Length = 466 Score = 455 bits (1171), Expect = e-129, Method: Compositional matrix adjust. Identities = 239/458 (52%), Positives = 316/458 (68%), Gaps = 4/458 (0%) Query: 1 MSL--RLVVLFGLLALALFTAVGSYLSHSLHVQLERRDDEELAGKCRSINHLVEHAASLE 58 MSL R+ +LF L+++ +F+ VG+YL SL QLE RDD+EL GK + HL E + S+ Sbjct: 7 MSLTSRIGLLFFLVSVLIFSGVGTYLYRSLAGQLEFRDDQELMGKISLMRHLAEESDSIA 66 Query: 59 DILARRHLMLDTLSGHDQMLVRIARADGSTLMESHDPARSAPDLDLSAINVRSWDRIEAL 118 I H LD + HD++++ + DG+ ++ ++ S P + + + + R L Sbjct: 67 AIRKDPHYFLDAAASHDRLIIMLKDVDGNIILHTNSDQGSLPTIAVLPLEMNPVPRSITL 126 Query: 119 --RVGELRARYIASMPATRSGEKTIVLVVRTASDRMLLLADYRADVWWAAGIGTLLATLL 176 L AR IA+ RSGEK +++V RTASDRM LL YR ++ AA GTLLA LL Sbjct: 127 LWTSTGLTARAIAAQGKVRSGEKIVIVVARTASDRMELLKAYRVEIGMAALCGTLLAALL 186 Query: 177 SYFLVRSGLSPLRMMAAQTRAISAHKLDTRLDLQAAPRELHEIVQSFNEMLDRLHRSFQQ 236 Y LVR GL P+R++A Q +I+AH+LDTRLDL +AP+ELHE+VQ+FN MLDRL SFQ+ Sbjct: 187 GYILVRRGLRPVRLIAGQASSITAHRLDTRLDLSSAPQELHELVQAFNAMLDRLDGSFQR 246 Query: 237 LSQFSADLAHDVRTPLNNLMVQTQVALGKPRGIDEYQALLSSNIEEYERLSRMMESMLFL 296 LSQFSADLAHD+RTPLNNLMVQTQVAL + R +++YQ LL SN+EEYERL+RM+ESMLFL Sbjct: 247 LSQFSADLAHDLRTPLNNLMVQTQVALVQARSVEDYQGLLISNVEEYERLTRMVESMLFL 306 Query: 297 ARADNAHVVLQLQELDVAEELSRIAEYFEGIAEEAQVRIAVSGAGRLRADTMLLRRAVGN 356 AR ++ HV+L L + EEL RIA+YFEG+A+EA VR+ V GR+ AD +LLRRA+GN Sbjct: 307 ARVEHTHVMLNKSALSLPEELQRIADYFEGLADEAGVRLTVEAGGRVYADAILLRRAIGN 366 Query: 357 LVANAIRYTPADGVITLQASLTEGATIIEVANPGPGIPPDQVERIFDRFYRADPSRSSAG 416 LVANAI YTP I L+ +T + V NPG GI + +F+RFYR D +RS++ Sbjct: 367 LVANAIPYTPRGATIVLKGVMTADGATVSVVNPGAGIAAQHIPHVFNRFYRGDAARSNSA 426 Query: 417 GSSGLGLAIVRTIMALHGGQASVHSEPGRQTVFVLRFP 454 S+GLGLAIV++IMALHGG+A+V SE T F L FP Sbjct: 427 TSTGLGLAIVQSIMALHGGRATVTSEENGLTEFSLIFP 464 >gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 458 Score = 242 bits (618), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 149/465 (32%), Positives = 252/465 (54%), Gaps = 22/465 (4%) Query: 1 MSLRLVVLFGLLALALFTAVGSYLSHSLHVQLERRDDEELAGKCRSINHLVEHAASLEDI 60 ++ RL LF ++A+ G+ +S ++ +D L + + I +++ + I Sbjct: 6 LTARLTTLFAATSVAVLVGFGTLISSAIEEHFAEQDQLLLQNELQLIQKVIKE----KGI 61 Query: 61 LARRHLMLDTLSGHDQMLVRIARADGSTLMESHDPARSA-----PDLDLSAINVRSWD-R 114 + + L H V + DG + + P R A P+++ +D R Sbjct: 62 DSISQTFGEALHNHPDFYVDVRDIDGKEIYSTLGPFRDAILSREPNIETE----NDFDVR 117 Query: 115 IEALRVGE-LRARYIASMPATRSGEKTIVLVVRTASDRMLLLADYRADVWWAAGIGTLLA 173 I+A R + +RA AS+ G IV++ + ++ +R + + + Sbjct: 118 IDAHREFQAIRAELKASV-----GSPVIVVIAVDKAIHTHFMSMFRTTLMLYILVAAMAT 172 Query: 174 TLLSYFLVRSGLSPLRMMAAQTRAISAHKLDTRLDLQAAPRELHEIVQSFNEMLDRLHRS 233 +L ++ R GLSPLR MAA+ +A+++ + R+ + A P E+ ++ N MLDRL Sbjct: 173 IMLGWWAARQGLSPLRTMAARAQAVTSQNMKERMPVDAVPTEMTDLAVKLNAMLDRLQND 232 Query: 234 FQQLSQFSADLAHDVRTPLNNLMVQTQVALGKPRGIDEYQALLSSNIEEYERLSRMMESM 293 +L++FSADLAH++RTP++N++ QT V L + R +Y+ LSSN EE +RL + + M Sbjct: 233 IARLTEFSADLAHELRTPISNMLTQTHVVLNQSRSAADYRDSLSSNAEELQRLGKTISDM 292 Query: 294 LFLARADNAHVVLQLQELDVAEELSRIAEYFEGIAEEAQVRIAVSGAGRLRADTMLLRRA 353 LFLA+ +N + +++L++A+E + E++E +AEE +V + G + D ++ RRA Sbjct: 293 LFLAQTENGLALPSVEKLNMAQECQALLEFYEALAEEKEVTLRCEGDAVVIGDRLMFRRA 352 Query: 354 VGNLVANAIRYTPADGVITLQASLTEGATIIEVANPGPGIPPDQVERIFDRFYRADPSR- 412 + NL++NA+RYTP+ G I+++ + T++ V N G IP + +FDRFYRAD SR Sbjct: 353 LNNLLSNALRYTPSHGTISIKIKAAQAGTVVTVENDGKEIPIEIQPHLFDRFYRADKSRK 412 Query: 413 SSAGGSSGLGLAIVRTIMALHGGQASVHSEPGRQTVFVLRFPTAQ 457 S S+GLGL+I R IM HGG SV S + T F L FP++Q Sbjct: 413 KSESDSAGLGLSITRAIMQAHGGSVSVVSGESK-TAFSLYFPSSQ 456 >gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 480 Score = 236 bits (602), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 150/469 (31%), Positives = 242/469 (51%), Gaps = 20/469 (4%) Query: 1 MSLRLVVLFGLLALALFTAVGSYLSHSLHVQLERRDDEEL---AGKCRSINHLVEHAASL 57 ++LR+ +L G+ +F A + SL + +D EL AG V H Sbjct: 18 LALRVTILVGITTTLVFMAFNWVIVRSLEMHFAEQDTTELQAVAGAVVKTLTEVPHQDGN 77 Query: 58 EDILARRHLMLDTLSGHDQMLVRIARADGSTLMESHDP------ARSAPDLDLSAINVRS 111 + ++ + G + + GS + H R D ++ +V Sbjct: 78 NSAMVKQ--LAAIAIGRHGVTYSVYTKSGSPVYIGHGADLGLLLKRGKFDSAIADDDVII 135 Query: 112 W-DRIEALRVGELRARYIASMPATRSGEKTIVLVVRTASDRML-LLADYRADVWWAAGIG 169 W D + R L R P G ++ + D L L ++ +WWA I Sbjct: 136 WKDSGRSYRGAALEVR-----PENTPGGIPFIVAIAMDIDFHLDFLTMFKTILWWATLIV 190 Query: 170 TLLATLLSYFLVRSGLSPLRMMAAQTRAISAHKLDTRLDLQAAPRELHEIVQSFNEMLDR 229 +++A ++++ V+ G P+R ++ RAI + +LD RLD P EL E+ SFN+ML R Sbjct: 191 SVIALIVAWCAVQWGHRPIRKVSRDIRAIRSSRLDVRLDPTEVPIELAELAASFNDMLGR 250 Query: 230 LHRSFQQLSQFSADLAHDVRTPLNNLMVQTQVALGKPRGIDEYQALLSSNIEEYERLSRM 289 + F +L+ FSAD+AH++RTP+ NL++QT+VAL + R EY+ +L SN+EE+ER+SRM Sbjct: 251 IEDGFAKLANFSADIAHELRTPVTNLVMQTEVALSQSRSSAEYREILYSNLEEFERMSRM 310 Query: 290 MESMLFLARADNAHVVLQLQELDVAEELSRIAEYFEGIAEEAQVRIAVSG-AGRLRADTM 348 + MLFLA+ +N L L ++ +A + + +YFE +AEEA + + + G A ++AD Sbjct: 311 ISDMLFLAQTENDPHNLHLSDISIAAMIQDLFDYFEALAEEANITLTLEGNAAPVKADRE 370 Query: 349 LLRRAVGNLVANAIRYTPADGVITLQASLTEGATIIEVANPGPGIPPDQVERIFDRFYRA 408 ++ RA+ NL++NAI+Y+ + + S + T + V NP I + + ++FDRF+R Sbjct: 371 MMLRALSNLISNAIQYSAPGSTVIVHLSQDKQVTTVSVENPAGQIAREDLPKLFDRFFRT 430 Query: 409 DPSRSSAGGSSGLGLAIVRTIMALHGGQASVHSEPGRQTVFVLRFPTAQ 457 DPSR +GLGLAIV++I HGG SE Q F + P Q Sbjct: 431 DPSRKRKASGAGLGLAIVKSIAEAHGGTVQATSEQA-QIKFEITLPHIQ 478 >gi|152982803|ref|YP_001351714.1| two-component system sensor protein [Janthinobacterium sp. Marseille] Length = 463 Score = 184 bits (466), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 144/455 (31%), Positives = 222/455 (48%), Gaps = 26/455 (5%) Query: 4 RLVVLFGLLALALFTAVGSYLSHSLHVQLERRDDEELAGKCRSINHLVEHAASLEDILAR 63 RL ++F L A +F+ G L ++L R +E+ + + L+ + A Sbjct: 15 RLTLMFALAAAVVFSITGYALYQFQCIELRRHQLQEIKTRFEFVESLIVRRINT----AE 70 Query: 64 RHLMLDTLSGHDQMLVRIARADGST--LMESHDPARS-----APDLDLSAINVRSWDRIE 116 + L+L+ D+M + DGS L+ES DPA A D +S N + R Sbjct: 71 KWLLLE-----DKM-TELTPQDGSIVYLVESKDPAFRLGRPFAADARIS--NEGNGVR-- 120 Query: 117 ALRVGELRARYI---ASMPATRSGEKTIVLVVRTASDRMLLLADYRADVWWAAGIGTLLA 173 R+ Y+ +PA + V AS A + A G ++ Sbjct: 121 --RIVTENGTYLTLSGELPAAGERPAVTLTVGLDASAFDTTSRAINAALVIAFLFGVVVV 178 Query: 174 TLLSYFLVRSGLSPLRMMAAQTRAISAHKLDTRLDLQAAPRELHEIVQSFNEMLDRLHRS 233 L +++ R GL + ++ +S L RL P EL+ +V SFN L R+ ++ Sbjct: 179 AGLGWWIARRGLLAVDDLSRHAENLSPLNLAERLPTGDMPSELNGLVLSFNGALGRVEQA 238 Query: 234 FQQLSQFSADLAHDVRTPLNNLMVQTQVALGKPRGIDEYQALLSSNIEEYERLSRMMESM 293 + QLS F+AD+AH++RTPL NL+ QTQV L + R +E +L SN+EE ERL ++ M Sbjct: 239 YVQLSTFNADVAHELRTPLGNLIGQTQVMLSRERSAEELTEVLQSNLEELERLRTIINDM 298 Query: 294 LFLARADNAHVVLQLQELDVAEELSRIAEYFEGIAEEAQVRIAVSGAGRLRADTMLLRRA 353 LFLA+AD L+ +A E+ + AE+ + + E+A V + V G D L RA Sbjct: 299 LFLAQADRGIRAANLELTSIASEVLKSAEFLDMLIEDAGVSLVVEGDAEASIDKSLFGRA 358 Query: 354 VGNLVANAIRYTPADGVITLQASLTEGATIIEVANPGPGIPPDQVERIFDRFYRADPSRS 413 + NL+ NAI++ + I + + A I V+N G + P +ER+F+RFYR D SR+ Sbjct: 359 ITNLLYNAIQHCDRNSTIRVHIEERDHAVAINVSNQGVPVEPHHLERLFERFYRVDSSRT 418 Query: 414 SAGGSSGLGLAIVRTIMALHGGQASVHSEPGRQTV 448 + S GLGLAIV+ I +HGG S T+ Sbjct: 419 DSDNSHGLGLAIVKAIAHMHGGTVFAASNAEMTTI 453 >gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 544 Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 109/352 (30%), Positives = 177/352 (50%), Gaps = 33/352 (9%) Query: 114 RIEALRVGELRARYI-ASMPATRSGEK-------TIVLVVRTASDRMLLLADYRADVWWA 165 R + +R E+R YI + T++ + +V V T R L+ V Sbjct: 177 RYDFIRNTEVRIAYIYVDLHKTQTAPQLSIEPRLALVQVAETLDKRSQLVNQIIKGVIVP 236 Query: 166 AGIGTLLATLLSYFLVRSGLSPLRMMAAQTRAISAHKLDTRLDLQAAPRELHEIVQSFNE 225 I +A +L +F + GL PL + + R L + +D P E+ +V S NE Sbjct: 237 EFIILPIALVLVWFALTRGLRPLVELQQRIRERRPDDL-SPIDSGYVPEEILPLVGSLNE 295 Query: 226 MLDRLHRSFQQLSQFSADLAHDVRTPLNNLMVQTQVALGKPRGIDEYQALLSSNIEEYER 285 ML+RL +S + +F AD AH ++TPL + +Q+++AL + ++ +++ L + + Sbjct: 296 MLERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSELALRQTDQVEIHKS-LEQLAKSSKS 354 Query: 286 LSRMMESMLFLARADNAHVVLQ-LQELDVAEELSR--IAEYFEGI--------AEEAQVR 334 +RM+ +L LARA+N + LQ L+++ EL+R + E+ + E+ Sbjct: 355 ATRMINQLLALARAENQTPTTRPLQPLELS-ELARDTVQEWVQTSFNKKIDLGFEQPDYH 413 Query: 335 IAVSGAGRLRADTMLLRRAVGNLVANAIRYTPADGVITLQASLTEGATI--IEVANPGPG 392 I V+G D ++LR + NL+ NA+ YTPA G T++ E A + +EV + GPG Sbjct: 414 IMVNG------DAIMLRELLNNLIDNALNYTPAGGHATVRVRADEEARLAYLEVEDTGPG 467 Query: 393 IPPDQVERIFDRFYRADPSRSSAGGSSGLGLAIVRTIMALHGGQASVHSEPG 444 I P + +RIF+RFYR S SGLGLAIVR I HG + + + P Sbjct: 468 IAPHEHKRIFERFYRI---LGSNVEGSGLGLAIVREIAQQHGAEIDILNNPN 516 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 890,702 Number of extensions: 33471 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 31 Length of query: 462 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 375 Effective length of database: 899,382 Effective search space: 337268250 Effective search space used: 337268250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)