BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0034.p (223 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 315 2e-87 gi|152983086|ref|YP_001353412.1| response regulator of copper se... 273 6e-75 gi|152981318|ref|YP_001352484.1| response regulator of copper se... 273 9e-75 gi|152981360|ref|YP_001351713.1| two-components system response ... 249 1e-67 gi|152983099|ref|YP_001353451.1| heavy metal response regulator ... 234 2e-63 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 315 bits (806), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 157/220 (71%), Positives = 187/220 (85%) Query: 1 MHILLVEDEPKSGDYLRRGLTEAGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M ILLVEDE KSG+YLR+GL EAGFVVDW + G +GL A Y+L+ILDVMLP ++GW Sbjct: 1 MKILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGW 60 Query: 61 DILRELRRTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRGPS 120 +LRELR+ DTPVLFLTARDEVEDRVKGLELGADDYLVKPF+F EL+ARVRTLLRRGP Sbjct: 61 QLLRELRKVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGPV 120 Query: 121 READVIEYDDVVVDVVRRKVSRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWDM 180 RE+ +IE D+ +DV++R+V+R G+R+DLTAKEF+LLH+L +R GEVLSR IASQVWDM Sbjct: 121 RESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVWDM 180 Query: 181 NFDSDTNVVDVAVRRLRAKLDEGFDQKLLHTVWGMGYVFE 220 NFDSDTNVVDVA+RRLRAKLD+ +KL+ TV G+GYV E Sbjct: 181 NFDSDTNVVDVAIRRLRAKLDDPHPRKLIQTVRGIGYVLE 220 >gi|152983086|ref|YP_001353412.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 230 Score = 273 bits (698), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 139/222 (62%), Positives = 173/222 (77%), Gaps = 2/222 (0%) Query: 1 MHILLVEDEPKSGDYLRRGLTEAGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M +L+VEDE K+G+YL++GL EAGF VD+ G+DG H A T Y LIILDVMLP ++GW Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGSYDLIILDVMLPDIDGW 60 Query: 61 DILRELRRTHDT-PVLFLTARDEVEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRG- 118 IL LR ++ P LFLTARD V DRVKGLELGADDY+VKPFAF+ELLARVRTLLRRG Sbjct: 61 KILHALRSAGNSVPALFLTARDGVADRVKGLELGADDYMVKPFAFSELLARVRTLLRRGN 120 Query: 119 PSREADVIEYDDVVVDVVRRKVSRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVW 178 PS D ++ D+V+D+ RR +RAG+R+ LT KEF LL L+R GEVL R IASQ+W Sbjct: 121 PSPLVDRLQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180 Query: 179 DMNFDSDTNVVDVAVRRLRAKLDEGFDQKLLHTVWGMGYVFE 220 D+NF+SDTNV+DVA+RRLRAK+D+ +D KL+ T+ G+GYV E Sbjct: 181 DINFNSDTNVIDVAIRRLRAKMDDDYDPKLISTIRGVGYVLE 222 >gi|152981318|ref|YP_001352484.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 227 Score = 273 bits (697), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 139/223 (62%), Positives = 173/223 (77%), Gaps = 2/223 (0%) Query: 1 MHILLVEDEPKSGDYLRRGLTEAGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M IL+VEDE K+ DY+R+GL EAGFVVD + G+DG H A Y L++LDVMLP ++GW Sbjct: 1 MKILVVEDENKTADYIRQGLREAGFVVDVARNGLDGHHMAMNEAYDLVLLDVMLPDVDGW 60 Query: 61 DILRELRRT-HDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAFTELLARVRTLLRR-G 118 I++ LR H PVLFLTAR V+DRVKGLELGAD YL+KPFAF+ELLA VRTLLRR Sbjct: 61 HIVKSLRDAGHQVPVLFLTARGSVDDRVKGLELGADSYLIKPFAFSELLAHVRTLLRRRN 120 Query: 119 PSREADVIEYDDVVVDVVRRKVSRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVW 178 ++D ++ D+V+D+ RRK +R GQRI LT KEFALL +L RR GEVL R IASQ+W Sbjct: 121 VPAQSDQLQIADLVLDLTRRKATRMGQRIVLTNKEFALLELLARRRGEVLPRSLIASQIW 180 Query: 179 DMNFDSDTNVVDVAVRRLRAKLDEGFDQKLLHTVWGMGYVFEV 221 DMNFDS+TNV+DVA+RRLRAK+DE ++ KL+HTV GMGY ++ Sbjct: 181 DMNFDSNTNVIDVAIRRLRAKMDEPYEPKLIHTVRGMGYTLDI 223 >gi|152981360|ref|YP_001351713.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 227 Score = 249 bits (635), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 126/222 (56%), Positives = 164/222 (73%) Query: 1 MHILLVEDEPKSGDYLRRGLTEAGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M ILL+EDE K+ YL+RGLTE G +VD G+DG H A T DY I+LD+MLPG +G Sbjct: 1 MKILLIEDEVKTVAYLQRGLTEQGCIVDVANNGIDGQHLALTGDYDAIVLDIMLPGRDGI 60 Query: 61 DILRELRRTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRGPS 120 ++L+ LRR TPV+ LTAR EV+DR+ GL+ GADDYLVKPF+F ELLAR++ L RRG Sbjct: 61 EVLQALRRQKSTPVIMLTARGEVDDRIHGLQTGADDYLVKPFSFLELLARLQALGRRGRP 120 Query: 121 READVIEYDDVVVDVVRRKVSRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWDM 180 +E+ I D+ +D++ R+ R +R+DLTAKEFALL L R G+VLS+ I VWD+ Sbjct: 121 QESTHIRIADLHIDLIARRAMRGVRRLDLTAKEFALLAALARHRGQVLSKTVIVEMVWDV 180 Query: 181 NFDSDTNVVDVAVRRLRAKLDEGFDQKLLHTVWGMGYVFEVR 222 NF+S+TNVV+VA++RLRAKLDE + KLLHT+ GMGY+ E R Sbjct: 181 NFESNTNVVEVAIKRLRAKLDEPSEVKLLHTIRGMGYLLEER 222 >gi|152983099|ref|YP_001353451.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 232 Score = 234 bits (598), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 123/232 (53%), Positives = 161/232 (69%), Gaps = 9/232 (3%) Query: 1 MHILLVEDEPKSGDYLRRGLTEAGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M IL VEDE K G+ + GL +AGF+VD V+ G +GL A Y LI+LDV P +NGW Sbjct: 1 MKILFVEDEIKPGETMHHGLKDAGFIVDCVKAGSNGLTRALRGAYDLIVLDVKKPHLNGW 60 Query: 61 DILRELRRTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRGPS 120 +L ELR HD P+LFLTAR+ ++++V +LG DDY++K F+F EL+ RVR LLRR Sbjct: 61 KLLLELRAAHDAPLLFLTAREAMDNQVSDAKLGVDDYMIKSFSFMELMERVRILLRRECE 120 Query: 121 READVIEYDDVVVDVVRRKVSRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVW-- 178 +E +IE D+++DV +R V R G+ IDLT K+F+LLH+L +R GE LSR IA+QVW Sbjct: 121 QEPKIIEISDILIDVSKRCVLRNGRYIDLTRKQFSLLHLLAKRSGEALSRSLIAAQVWGA 180 Query: 179 ----DMN---FDSDTNVVDVAVRRLRAKLDEGFDQKLLHTVWGMGYVFEVRR 223 D N FD DTNVVDVAV RLRAKLD+ + Q+L+ TV GMGYV E ++ Sbjct: 181 DFDGDTNVVDFDGDTNVVDVAVCRLRAKLDDHYPQQLIRTVRGMGYVLEDKK 232 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.142 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 509,720 Number of extensions: 19489 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 31 Length of query: 223 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 143 Effective length of database: 925,261 Effective search space: 132312323 Effective search space used: 132312323 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 128 (53.9 bits)