BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0032.p (735 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protei... 300 2e-82 gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 276 2e-75 gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 272 5e-74 gi|152981462|ref|YP_001353834.1| signal transduction protein [Ja... 259 3e-70 gi|152981125|ref|YP_001352453.1| sensory box protein [Janthinoba... 259 4e-70 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 300 bits (768), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 186/532 (34%), Positives = 290/532 (54%), Gaps = 9/532 (1%) Query: 202 IAFANGAAQTMLGWPTDQLEALPCAQIFQDPLQQA-VYVTNKLVREQGAAGEIVLLKRGD 260 I + N A + + G+ + + + ++ +QA +Y + E+ ++ R + Sbjct: 373 IEYVNPAFERITGYTAAEAIGRSSSFLLRNDHEQAGLYEIRAALAEKREGKAVLRNYRKN 432 Query: 261 GHSFPAELHCAMI--DGASPGGQIWVIIDVSERLEAENRIDRLAFYDPVTELPNKKLFLD 318 G F +L+ A + D + + D++ + E + RLA +D +T LPN+ L D Sbjct: 433 GSLFWNDLYIAPVKDDEGKTTHFVAAMSDITPMKQYETTLHRLASHDVLTGLPNRALLQD 492 Query: 319 RLRRGLVRQQSQGSPIAVFYLEIHRADLSHGLVKADDADHLSKECARRLGACVSVDQTLA 378 RL + G + V +++ R + + D L K + RL A V T+A Sbjct: 493 RLENAIAYSARNGHAVWVVLVDLDRFKFVNDTMGHQAGDVLLKIISDRLQASVRESDTVA 552 Query: 379 RLDGEHFALGCEIRSEALADGIRFCEALARRLTAALAEPQGVAVS-FPYSLNIGINILRG 437 RL G+ F L + E + + +R+ A+ +P + S F S ++GI + Sbjct: 553 RLGGDEFVL---VLPECGDGPSGYSSDVIQRIMEAVVKPLTIQGSEFFLSCSMGIAVYPN 609 Query: 438 QVQSAEEALMQAKLAMVQSLAAGRNAFRFFDPAMQALASQRSALEVELREAVAQGQFVVY 497 L A +AM +S GRN F+F+ PAM A +R +E ELR A+ + V++ Sbjct: 610 DGADPTTLLAHADVAMYRSKELGRNNFQFYTPAMNDQALERLRIEGELRHAIELNELVLH 669 Query: 498 YQPQVT-YEGQVVGAEALVRWMHPSKGMVAPAQFIAVAEQLGLMEEIGHLVLEVICCDLE 556 YQPQV + G +VG EALVRW HP GMV P FI++AE+ GL+ IG VL+ C + Sbjct: 670 YQPQVDLHTGAIVGLEALVRWNHPILGMVQPGSFISLAEETGLIIPIGAWVLQTACRQAK 729 Query: 557 SWQRAGLAQDLVVAVNVSAQEFKVDHFVARFHETIRHHRLHSKAVKVELTESMMIENIDE 616 +WQ G Q L +AVN+SA++F + +T++ L ++ +++ELTES ++ +I+ Sbjct: 730 AWQDMGFTQ-LRIAVNLSARQFTQASLLESIKDTLQETGLEARFLEIELTESSVMADIER 788 Query: 617 VIEKMNDLKSHAVSISLDDFGTGYSSLSYLGRFPIDQIKIDQSFVRQIQTDAATASIIRS 676 I + DLKS V +S+DDFGTG+SSL+YL RFPID +KID+SFVR I + ASI+ S Sbjct: 789 NILTLRDLKSLGVQLSVDDFGTGHSSLAYLKRFPIDTLKIDRSFVRDIAINQDDASIVSS 848 Query: 677 IIMLGQSLGLSIIAEGVETQEQRDLLHAQGCTLYQGFWYGRPMPGEQFAALL 728 II L +L L++IAEGVET Q D+L AQGC QG+++ +P+P +Q LL Sbjct: 849 IISLAHNLKLNVIAEGVETASQMDILRAQGCNEIQGYYFCKPLPSDQIETLL 900 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 276 bits (707), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 165/477 (34%), Positives = 264/477 (55%), Gaps = 12/477 (2%) Query: 258 RGDGHSFPAELHCAMI--DGASPGGQIWVIIDVSERLEAENRIDRLAFYDPVTELPNKKL 315 R DG F ++L+ A + D + + D++ E+ ++ D +T L N+ L Sbjct: 473 RKDGALFWSDLYIAPVKDDTGEVSHFVVALYDITATKRYESELEFQTNRDALTGLANRSL 532 Query: 316 FLDRLRRGLVRQQSQGSPIAVFYLEIHRADLSHGLVKADDADHLSKECARRLGACVSVDQ 375 DRL + + PI + ++++ R + + D L K A RL V Sbjct: 533 LRDRLSQAISYAHRYNHPIWIAFVDLDRFKFVNDTLGHQAGDLLLKAIAERLQHAVRDTD 592 Query: 376 TLARLDGEHFALGCEIRSEA-LADGIRFCEALARRLTAALAEPQGV-AVSFPYSLNIGIN 433 T++R+ G+ F L R +A L+ GI +R+ +A+P + F S +IG+ Sbjct: 593 TVSRMGGDEFVLILPERVDAGLSTGI------VQRIMDGIAQPLTIEGHEFFISSSIGVA 646 Query: 434 ILRGQVQSAEEALMQAKLAMVQSLAAGRNAFRFFDPAMQALASQRSALEVELREAVAQGQ 493 + + EE + A +AM ++ GRN F+F+ +M A +R LE +LR A+ +G+ Sbjct: 647 VYPNDGVTPEELIKHADIAMYRAKETGRNNFQFYTSSMNERALERLRLEGDLRNAMERGE 706 Query: 494 FVVYYQPQVTYE-GQVVGAEALVRWMHPSKGMVAPAQFIAVAEQLGLMEEIGHLVLEVIC 552 F+++YQPQ+ G++VG EAL+RW HP GM+ P +FI +AE+ GL+ IG V+ C Sbjct: 707 FILHYQPQLDLRTGKIVGVEALIRWQHPELGMIPPMRFIGLAEETGLIVPIGAWVIREAC 766 Query: 553 CDLESWQRAGLAQDLVVAVNVSAQEFKVDHFVARFHETIRHHRLHSKAVKVELTESMMIE 612 + WQ GL L ++VN+SA++F + + +L + +++ELTES+++ Sbjct: 767 RQNKVWQEHGLGS-LRMSVNLSARQFAQQDLLESIALALEETQLPPQCLEIELTESLVMA 825 Query: 613 NIDEVIEKMNDLKSHAVSISLDDFGTGYSSLSYLGRFPIDQIKIDQSFVRQIQTDAATAS 672 ++D I + +LK+ V +S+DDFGTGYSSLSYL RFPID +KID+SFV I TD A+ Sbjct: 826 DVDHAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDRSFVNDITTDPDDAA 885 Query: 673 IIRSIIMLGQSLGLSIIAEGVETQEQRDLLHAQGCTLYQGFWYGRPMPGEQFAALLQ 729 I+ SII L SL L++IAEGVET+EQ L C QG+++ RP+ + +L+ Sbjct: 886 IVASIISLAHSLRLTVIAEGVETEEQLAYLQQHDCDQIQGYFFSRPITADAMEVMLK 942 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 272 bits (696), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 176/549 (32%), Positives = 288/549 (52%), Gaps = 38/549 (6%) Query: 199 DGRIAFANGAAQTMLGWPTDQLEALPCA------QIFQDPLQQAVY---------VTNKL 243 DG +A N A M G+ D +AL Q++ DP ++ + VTN Sbjct: 168 DGYLA-VNPALARMYGY--DSPQALISTLRDIDNQVYVDPQRRLEFKRLMAKHGVVTNFE 224 Query: 244 VREQGAAGEIVLLKRGDGHSFPAELHCAMIDGASPGGQIWVIIDVSERLEAENRIDRLAF 303 R GE++ + + ++ +G ++ER E I A Sbjct: 225 SRVHRRNGEVIWISENARSVYNSDGTLLFFEGTVEA--------ITERKLHEAEIQFQAT 276 Query: 304 YDPVTELPNKKLFLDRLRRGLVRQQSQGSPIAVFYLEIHRADLSHGLVKADDADHLSKEC 363 +D +T LPN+ L DR+++ ++ + G A+ +L++ + + + D L K Sbjct: 277 HDALTGLPNRTLLYDRMQQAVLHSERYGKLTAIAFLDLDQFKFINDSLGHQVGDELLKIT 336 Query: 364 ARRLGACVSVDQTLARLDGEHFAL--GCEIRSEALADGIRFCEALARRLTAALAEP-QGV 420 A+RL +C+ T+AR G+ F L + EA+ ++ R+ +++P + Sbjct: 337 AQRLTSCLRESDTVARQGGDEFVLLLTDQPNEEAITHTMQ-------RVLHEVSQPWKAN 389 Query: 421 AVSFPYSLNIGINILRGQVQSAEEALMQAKLAMVQSLAAGRNAFRFFDPAMQALASQRSA 480 + F + +IG+ + + AE L A AM ++ GRN F++F M + + R Sbjct: 390 DLEFQITCSIGLTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQYFSAEMNSSVTDRLE 449 Query: 481 LEVELREAVAQGQFVVYYQPQVTYEG-QVVGAEALVRWMHPSKGMVAPAQFIAVAEQLGL 539 L LR+A+ FV++YQP+V+ Q++GAEALVRW GMV+PA FI +AE+ GL Sbjct: 450 LLNRLRQAITNEDFVLHYQPKVSLASHQIIGAEALVRWNSAHSGMVSPASFIPLAEETGL 509 Query: 540 MEEIGHLVLEVICCDLESWQRAGLAQDLVVAVNVSAQEFKVDHFVARFHETIRHHRLHSK 599 + +G VL C +WQ AG + ++VN+S ++ V + L ++ Sbjct: 510 IIPLGEWVLRTACRQNRAWQDAGYPP-IPISVNLSPRQLARGDIVEVVERILTETGLEAQ 568 Query: 600 AVKVELTESMMIENIDEVIEKMNDLKSHAVSISLDDFGTGYSSLSYLGRFPIDQIKIDQS 659 +++E+TES+M ++++ + L+S V ISLDDFGTGYSSLSYL RFP+D +KIDQS Sbjct: 569 HLELEITESVMTTDVEKSFALLTQLRSLGVKISLDDFGTGYSSLSYLKRFPVDTLKIDQS 628 Query: 660 FVRQIQTDAATASIIRSIIMLGQSLGLSIIAEGVETQEQRDLLHAQGCTLYQGFWYGRPM 719 FVR I TD +A+I+++II LG++L L+++AEG+ET++Q L A GC QG+ +P+ Sbjct: 629 FVRDIATDQDSAAIVKAIISLGRNLNLTVLAEGIETEDQFQFLLANGCDEGQGYLMSKPV 688 Query: 720 PGEQFAALL 728 P + F LL Sbjct: 689 PNKNFVDLL 697 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 709 Score = 259 bits (663), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 152/435 (34%), Positives = 244/435 (56%), Gaps = 9/435 (2%) Query: 294 AENRIDRLAFYDPVTELPNKKLFLDRLRRGLVRQQSQGSPIAVFYLEIHRADLSHGLVKA 353 A + + A D +T+LPN+ L DRL + + + + S A+ ++++ + + Sbjct: 255 ANQELTKQALQDNLTKLPNRTLLEDRLDQMVHKAVREQSRFALMFIDLDGFKAINDSLGH 314 Query: 354 DDADHLSKECARRLGACVSVDQTLARLDGEHFALGCEIRSEALADGIRFCEALARRLTAA 413 D L + A+R+ + T ARL G+ F + E+ A ++A +L Sbjct: 315 HIGDLLLIDVAKRIRDNIRAQDTAARLGGDEFVMLIEVNEPEDA------ASVADKLCTT 368 Query: 414 LAEPQGVA-VSFPYSLNIGINILRGQVQSAEEALMQAKLAMVQSLAAGRNAFRFFDPAMQ 472 L +P +A + S +IGI + + + L+ A AM + + GRN + FF+ +M Sbjct: 369 LNQPFDIAQYNLGISASIGIAVYPEDGSTRHDLLIHADAAMYHTKSTGRNGYHFFEASMN 428 Query: 473 ALASQRSALEVELREAVAQGQFVVYYQPQV-TYEGQVVGAEALVRWMHPSKGMVAPAQFI 531 A + + +LR A+ + +F ++YQP+ T +G VVGAEAL+RW HP +G+VAPA FI Sbjct: 429 INAHNQLQVIQDLRTALERKEFRLHYQPKFNTTDGVVVGAEALLRWQHPIRGIVAPADFI 488 Query: 532 AVAEQLGLMEEIGHLVLEVICCDLESWQRAGLAQDLVVAVNVSAQEFKVDHFVARFHETI 591 ++AE+ GL+ IG VL+ C + W G Q +AVN+S+ +F D+ V ET+ Sbjct: 489 SLAEKTGLIVPIGEWVLDEACRQMRKWYDEGY-QQWKIAVNLSSVQFSNDNLVEMVKETL 547 Query: 592 RHHRLHSKAVKVELTESMMIENIDEVIEKMNDLKSHAVSISLDDFGTGYSSLSYLGRFPI 651 + L + + +E+TES + N++ + + L S V IS+DDFGTGYSSL YL R P Sbjct: 548 ARNNLPATCLMLEVTESTAMHNVEASLTILEQLVSLGVEISIDDFGTGYSSLLYLKRLPA 607 Query: 652 DQIKIDQSFVRQIQTDAATASIIRSIIMLGQSLGLSIIAEGVETQEQRDLLHAQGCTLYQ 711 ++KID+ F+R + + ASI+ +I+ LG+SL L I+AEGVET++Q++ L GC Q Sbjct: 608 TELKIDRGFIRDLAHGSDDASIVSAIVALGRSLNLRIVAEGVETEKQQEYLTTLGCDTLQ 667 Query: 712 GFWYGRPMPGEQFAA 726 G++ G PM EQF A Sbjct: 668 GYFMGHPMASEQFMA 682 >gi|152981125|ref|YP_001352453.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 459 Score = 259 bits (662), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 123/258 (47%), Positives = 177/258 (68%) Query: 471 MQALASQRSALEVELREAVAQGQFVVYYQPQVTYEGQVVGAEALVRWMHPSKGMVAPAQF 530 MQA S+R+ +E +LR+A+ Q ++YYQPQ +G++VGAEAL+RW HP KGMV+PA F Sbjct: 178 MQADLSERNVMEADLRKALQDNQLMLYYQPQTGNDGRIVGAEALLRWRHPVKGMVSPADF 237 Query: 531 IAVAEQLGLMEEIGHLVLEVICCDLESWQRAGLAQDLVVAVNVSAQEFKVDHFVARFHET 590 I +AEQ GL+ IGH VL + C L SW + L +A+NVSA +FK FV++ Sbjct: 238 IPLAEQTGLILPIGHWVLGMACAQLISWSKHPATAQLSLAINVSALQFKQPDFVSQVVSV 297 Query: 591 IRHHRLHSKAVKVELTESMMIENIDEVIEKMNDLKSHAVSISLDDFGTGYSSLSYLGRFP 650 + +++ELTESM++ +++++I KMN LK + +SLDDFGTGYSSLSYL + P Sbjct: 298 LDRSGADPHLLELELTESMLVNDVNDIIAKMNALKEKGLRLSLDDFGTGYSSLSYLKKLP 357 Query: 651 IDQIKIDQSFVRQIQTDAATASIIRSIIMLGQSLGLSIIAEGVETQEQRDLLHAQGCTLY 710 +DQ+KIDQSFVR + D+ +I+R+++ L + +GL +IAEGVETQEQR L GC + Sbjct: 358 LDQLKIDQSFVRDMLFDSNDVTIVRTVVELARGMGLHVIAEGVETQEQRQFLAELGCLSF 417 Query: 711 QGFWYGRPMPGEQFAALL 728 QG+ RP+P +F A++ Sbjct: 418 QGYLLSRPVPNAEFEAVV 435 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,564,199 Number of extensions: 61799 Number of successful extensions: 243 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 201 Number of HSP's successfully gapped: 19 Length of query: 735 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 645 Effective length of database: 888,291 Effective search space: 572947695 Effective search space used: 572947695 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)