BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0030.p
         (242 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981584|ref|YP_001352112.1| hypothetical protein mma_0422 [...    96   1e-21

>gi|152981584|ref|YP_001352112.1| hypothetical protein mma_0422
           [Janthinobacterium sp. Marseille]
          Length = 300

 Score = 96.3 bits (238), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 118/238 (49%), Gaps = 18/238 (7%)

Query: 3   KHSVIYGDQQIRFSLRYLQRPTRRVSIHVSPEGAVQVDAPEGTALPEIKQAVRKRAAWIW 62
           K  V  G+  + ++L   +R  R +   +  +G +++ AP+   L EI+ A+ ++  WI+
Sbjct: 62  KRRVHVGEHILDYTLVRSKR--RSIGFMIDDDG-LRITAPKWVTLTEIENAICEKQRWIF 118

Query: 63  QQLQAVTRRRLHVLPR-----EYVSGETHFYLGRRHMLKVLRAEGGESGVRLWRGRLEIR 117
            +L     RR H   R     E+  G T  YLG    L++L  +   +G+       E+ 
Sbjct: 119 TKL---NERREHSARRLQPQMEWRDGATLPYLGHDITLRILGTQA--AGIAYNADTKELT 173

Query: 118 AVRPDALTVRKL---LEDWYRQRATDVFAKVLLEMAPRLGLRRTMPPVRLLSMRTQWGSC 174
              P A   R+L   ++ W +  A  +FA+ L   A +L +  +     L S  TQWGSC
Sbjct: 174 VCLPGAAAERQLKDRVQGWLQLEAKRIFAERLPVYAEKLNV--SYQSFALSSAMTQWGSC 231

Query: 175 SPKGEILLNPSLVKAPRPCIEYVVAHELCHLREHNHSDRFYKHLARALPDWEARKAEL 232
           +  G+I LN  L+    P I+YV+AHEL HLRE NHS RF+  +    P++ A K  L
Sbjct: 232 TADGKIRLNWRLIHFALPLIDYVIAHELSHLREMNHSPRFWATVQSVFPEFVAAKKAL 289


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 532,823
Number of extensions: 20789
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 161
Effective length of database: 921,564
Effective search space: 148371804
Effective search space used: 148371804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)