BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0013.p
         (908 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981376|ref|YP_001354440.1| hypothetical protein mma_2750 [...    69   2e-12

>gi|152981376|ref|YP_001354440.1| hypothetical protein mma_2750
           [Janthinobacterium sp. Marseille]
          Length = 557

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 160/369 (43%), Gaps = 65/369 (17%)

Query: 176 LLVMATGTGKTRTTIALVDALLRSKRTQRVLFLADRRELVRQAMSEFKSHLPNESVARIE 235
           L V  TG+GKT    A+  + L  +   +   LA R EL  Q  ++F+   P    +  +
Sbjct: 25  LAVAPTGSGKTIMLSAVTGSFL-VEPDAKACILAHRTELTGQNRAKFERVNPGMQTSVFD 83

Query: 236 MGETS-GARIQFATYPSMMQVYSRL----SVGYYDLIVADESHRSIYQRYKAIFDHF--- 287
             E S   +  FA    M+Q  SRL     +   DL+V DE+H +    Y+AI D     
Sbjct: 84  ANEKSWHGQATFA----MVQTLSRLPHLEQMPTLDLLVIDEAHHASSPSYRAIIDAVRTR 139

Query: 288 --DAIQLGLTATPTDYIDHNTFELF-DCGDRVPSYYYSYEQAIADKNLVNYRVLDAQTTF 344
              A   GLTATP         ++F +  D++     +  + IA  +LV+ R      TF
Sbjct: 140 NPKAGICGLTATPNRGDGKGLRDVFSNVADQI-----TLGEMIAAGHLVSPR------TF 188

Query: 345 QLQ-GIQGDALPEPLKQMARDQGVELDELNFDGSDIEKSIVNQGTNDAIVREFMERSRKD 403
            +  G+Q     E LK       V    ++FD  ++   +  +   +A+++ + E++   
Sbjct: 189 VIDVGVQ-----EALKN------VRKTAMDFDMDEVASILDKRLITEAVIKHWKEKAST- 236

Query: 404 ERGLPHKSIVFAISHAHAKRIYEGFNR-------LYPELQREGMVEIIDSHMERAEATLN 456
                 K+I+F  + AHA+ + + F         +Y +L          S  ER +A L 
Sbjct: 237 -----RKTIIFCSTVAHAQNVCDAFVASGVQAVLIYGDL----------SDGER-KARLA 280

Query: 457 DFKYRAMPRVAISVDMLDTGVDIPAIQNLVFAKPVFSKVKFWQMIGRGTR-LHTDKATGE 515
           +++     +V ++V +L  G D      +V  +P   K  F QM+GRG R +   +  G 
Sbjct: 281 EYE-TGRAQVVVNVAVLTEGYDYTPTGCVVLLRPSSYKSTFIQMVGRGLRTVDPQEFPGV 339

Query: 516 PKKDFLIID 524
            K D +++D
Sbjct: 340 IKSDCIVLD 348


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 2,036,473
Number of extensions: 85134
Number of successful extensions: 268
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 1
Length of query: 908
Length of database: 1,221,021
Length adjustment: 92
Effective length of query: 816
Effective length of database: 880,897
Effective search space: 718811952
Effective search space used: 718811952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)