BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0006.p (659 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983304|ref|YP_001354724.1| transposase [Janthinobacterium ... 289 5e-79 gi|152983152|ref|YP_001352497.1| hypothetical protein mma_0807 [... 163 4e-41 >gi|152983304|ref|YP_001354724.1| transposase [Janthinobacterium sp. Marseille] Length = 610 Score = 289 bits (739), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 181/543 (33%), Positives = 277/543 (51%), Gaps = 7/543 (1%) Query: 70 SISLGRPLSTFSQPVQQNAIRKKAYLDFIQNQGRFVSTPSTLQIHIEECARRLGDPTPPS 129 + LG+ +S + + + ++ + + LQ ++ + L D TPPS Sbjct: 3 ATKLGKQFDVWSSASESDRAEARRRFAYVNAAIGGPKSATALQNCSDQVSAELDDRTPPS 62 Query: 130 PITVYRWNRELAMHQGDYRSLIARHDRKGGHGCRLHQDVREILTAVIDEVYLSEQRNSGD 189 T W + D SL+ + R+G R H ++ EI+ ++ +YL++QR S Sbjct: 63 ITTFKAWISRYQNGRNDIASLLPKTKRRGNRTRRYHDELEEIVDRSLETMYLTQQRLSMC 122 Query: 190 MVHAEVITRINKWNEFQQPNR-RLAIPSRATIYRAL-SNLDRYDEMAARFGKRIADMKFR 247 T I N+ N + +PS +R L S +D ARFG+ A ++ Sbjct: 123 DARLHAATHIAAHNKSTPANENKFTMPSIEYFWRRLRSTYSEFDICCARFGQTYAARRYE 182 Query: 248 TSGLGGSQMRILQRVEIDHTPLDLFVIDEKTDLPQGRPTVTLAIDAYSKMPVGMHVGFSG 307 T R L RVEIDHT +DL V+D ++ LP GRP +T+AID ++ +G ++ F Sbjct: 183 TVQGFSRGERPLDRVEIDHTVIDLTVVDGRSGLPLGRPYLTIAIDDDTRCILGYYLSFEP 242 Query: 308 PSIEAVFACIRHALLPKTYVKEAYPEIENDWPCYGHIETLVCDNGLEFHSPELERVALEL 367 PS +V C+RHA+L K+Y+KE YP I+N W CYG LV DNG +FHS LE +A Sbjct: 243 PSYLSVSYCLRHAILSKSYIKEMYPNIKNTWDCYGVFTNLVVDNGSDFHSIALEDLAKRF 302 Query: 368 GTQIVFCPKRQAYYKGSIERFLKSLNFQFARMLPGHSFAKWFHREDYDPLKDAVITFDQM 427 GT I +CP+ + YKG IER ++N LPG +F+ +++YD L +AVI+ +++ Sbjct: 303 GTTIQYCPRAKPRYKGKIERLYGTMNRGLFHTLPGTTFSNIVEKDEYDSLGNAVISLEKL 362 Query: 428 MRYLHRWLIDVYAQRLHRGINSSPYRKWSENALQEPPRLIADLNRLDITLGRSCERTLFH 487 +H W++D+Y Q+ I P +W ++ P + A + LD TL ERTL Sbjct: 363 HEIVHIWIVDLYHQKKQTAIGEPPASRWRKHITGMPIPVPACVTDLDATLAVPFERTLTR 422 Query: 488 YGIELHNLRYN-DPALLSIRRQLGEQVKVQIRYYFDDISLIHVIDPITQNAIPVPALDQ- 545 GIE L YN D L + R G KV+ RY +D+ I++ + T + VPA + Sbjct: 423 NGIEHLTLEYNSDECGLYLARMKG-STKVKCRYNPNDLGHIYIEEHDTGHVFKVPAKVKW 481 Query: 546 -AYARGLSIEQHRLICARAREINKGAINTSSIARAKSEIREITHELSLSKLQRKRQRAAK 604 YA GLS QH+L C R N + ++A AK +I +I E ++ +R R R A+ Sbjct: 482 HEYANGLSRWQHQL-CQRFAAKNLEKEDIFALAEAKEKIAQIVEEEIFTQKKRTRARVAR 540 Query: 605 LQG 607 QG Sbjct: 541 YQG 543 >gi|152983152|ref|YP_001352497.1| hypothetical protein mma_0807 [Janthinobacterium sp. Marseille] Length = 648 Score = 163 bits (412), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 161/634 (25%), Positives = 274/634 (43%), Gaps = 39/634 (6%) Query: 6 FKVGALITIKQQRFRIVRIIADGRVQLEAEVDGTLSNTTCEELLKHYAEKNLRFSDSHSD 65 +G ++K Q F I I A V+ A G + + + F D S Sbjct: 9 LSIGTRFSLKNQAFEITFIDAVN-VRYAACAGGRIHTMPTTAFWEFVDSGVVGFLDK-SH 66 Query: 66 DEPGSISLGRPLSTFSQPVQQNAIRKKAYLDFIQNQGRFVSTPSTLQIHIEECARRLGDP 125 + P S+ G +S S ++ + + ++ + V + L+ IE Sbjct: 67 NVP-SLENGYAVSRLSDTEREQMLSRYKFVQEAMRCTQRVHSRKNLKRAIETVFSANEST 125 Query: 126 TPPSPITVYRWNRELAMHQGDYRSLIARHDRKGGHGCRLHQDVREILTAVIDEVYLSEQR 185 P T+ RW + D SL+ RH KG R DV I+ I + +L+ R Sbjct: 126 ARPGISTLSRWIQRFISSGCDVTSLVPRHAEKGYRQKRFSIDVEHIINIAIRDDFLTSAR 185 Query: 186 NSGDMVHAEVITRINKWNEFQQPNRRLAIPSRATIYRALSNLDRYDEMAARFGKRIADMK 245 + VHA VI R E+ +++PS TIYR ++ LD Y + R GKR AD++ Sbjct: 186 PTVRQVHANVIGRAL---EYGFKPAEISLPSSRTIYRRINELDPYIKALKRNGKRYADLR 242 Query: 246 FRTSGLGGSQMRILQRVEIDHTPLDLFVIDEKTDLPQGRPTVTLAIDAYSKMPVGMHVGF 305 FR +G R+++ V +D +D+ VID++T GRP + D +++ VG H+ Sbjct: 243 FRAAGASTETSRLMELVMMDGHRMDVIVIDKETGEALGRPYLVCLFDVHTRAVVGWHISL 302 Query: 306 SGPSIEAVFACIRHALLPKTYVKEAYPEIENDWPCYGHIETLVCDNGLEFHSPELERVAL 365 + C AL +K+ P G ET++ DNG + S L + Sbjct: 303 -------IPFCSTTALAA---IKDMCSRDPLSGPG-GVPETIITDNGPDLVSNALRNLLS 351 Query: 366 ELGTQI----VFCPKRQAYYKGSIERFLKSLNFQFARMLPGHSFAKWFHREDYDPLKDAV 421 +L + +CP +A+ +ERF ++L Q +L G +F+ R DYD + +A Sbjct: 352 KLEIHVQSSKTYCPDDKAF----LERFFRTLCTQLVHILKGSTFSSPTQRGDYDSVANAS 407 Query: 422 ITFDQMMRYLHRWLIDVYAQRLHRGINSSPYRKWSENALQEPPRLIADLNRLDITLGRSC 481 I+ + + Y +WL + Y Q +H N +P W + E P L LD S Sbjct: 408 ISLEDLRSYFKQWLEETYHQAIHSVTNRAPALSWRDKQ-AEMPILSYAKEDLDAIARISY 466 Query: 482 ERTLFHYGIELHNLRYNDPALLSIRRQLGEQVKVQIRYYFDDISLIHV---IDPITQNAI 538 R + + + + NL Y AL + + + V V + D+++L +V ID ++ I Sbjct: 467 RRKISNGRVIVDNLAYKSDALATFEMRGQQNVTVMV----DEMNLEYVYVSIDGQPRSLI 522 Query: 539 PVPALDQAYARGLSIEQHRLI---CARAREINKGAINTSSIARAKSEIREITHELSLSKL 595 + Q YA L+ +H+ + A+ + ++ + + A+ + H+L SK Sbjct: 523 RADCVKQNYANKLTKYEHQKVQEELAKLSQNDRDELGVHAHEIARWRLWNTIHKLPNSKS 582 Query: 596 QRKRQRAAKLQGVKQTQQKVPTVAQNIPVADIEN 629 RK + K Q ++ T+ K+ +PV I+N Sbjct: 583 TRKLKSLEKAQ-IEDTKVKMRNAV--LPVDTIDN 613 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,476,092 Number of extensions: 60366 Number of successful extensions: 162 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 2 Length of query: 659 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 570 Effective length of database: 891,988 Effective search space: 508433160 Effective search space used: 508433160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)