BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0005.p
         (242 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983381|ref|YP_001354723.1| hypothetical protein mma_3033 [...    74   9e-15

>gi|152983381|ref|YP_001354723.1| hypothetical protein mma_3033
           [Janthinobacterium sp. Marseille]
          Length = 238

 Score = 73.9 bits (180), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 21/220 (9%)

Query: 31  RAREPISRSFGLIRGKFPSQKVGRMIHWESQLERDAVLLFEFSRGVISYREQPLTTYYAL 90
           RAR+ + RS   + GKFPS +    +HWES  ERD V+  + +  ++S++EQP T  Y L
Sbjct: 24  RARKIVRRSNLRVTGKFPSFRNNTSVHWESFNERDCVIRLDANPRIVSFKEQPATLTYFL 83

Query: 91  DGKVRRYTPDFEITLFTGEVVLIEVKPSEKLLDPKESTRLRR---IAEHLAETGSAYRIL 147
           +GK  ++ PD    +  G    IEVK      DP     + R   I   L   G  Y ++
Sbjct: 84  NGKTYKHFPDL-FVVGNGRAAFIEVKSHT---DPDLCEAIERGDAIRPVLLMQGFDYFVV 139

Query: 148 TEIELRPGDLLANLQMVFRY--------REAKLSPFERRKFSEQIRVVEEMTFGEATALL 199
           T++E+R     ++ +++ R         R+ +L  F  RK   Q R +   TFGE     
Sbjct: 140 TDLEIRQEPQFSDAKILLRLGRNPVSDIRKEQLRRFFLRK-PPQWRDIVSGTFGENAVFD 198

Query: 200 GAKSLVWILIAEHLLFCDLRHPVTEKTVLFTGIREGWNEE 239
             +     L+ E     D R+ ++  +V+ T      +EE
Sbjct: 199 VCR-----LLLEGYFSYDRRYALSATSVISTTPSASTSEE 233


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 556,707
Number of extensions: 21904
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 161
Effective length of database: 921,564
Effective search space: 148371804
Effective search space used: 148371804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)