BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0001.p
         (467 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981050|ref|YP_001351691.1| chromosomal replication initiat...   802   0.0  

>gi|152981050|ref|YP_001351691.1| chromosomal replication initiation
           protein [Janthinobacterium sp. Marseille]
          Length = 460

 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/467 (83%), Positives = 416/467 (89%), Gaps = 7/467 (1%)

Query: 1   MENFWQACSHKLEQELTPQQYSAWIKPLVPLDFEDGLLRIAAPNRFKLDWVKTQFANRIT 60
           MENFWQ CS +LEQELTPQQYSAWIKPL PLD+EDG LRIAAPNRFKLDWVKTQFA RIT
Sbjct: 1   MENFWQTCSAQLEQELTPQQYSAWIKPLAPLDYEDGTLRIAAPNRFKLDWVKTQFAGRIT 60

Query: 61  ALACEYWDAPTEVQFVLDPRGNQGRRPATANAQANGGGANGLGLPNHEQLHLDPEPAQPV 120
           ++A ++WD P +VQFVLDPR    ++P T+   A+        +P      L+P P+   
Sbjct: 61  SIAAQFWDMPVDVQFVLDPRLASAKKPTTS---ASVAPIQSDDVPASV---LEPIPSNAT 114

Query: 121 RAVAPRQEQSRINPVLTFDNLVTGKANQLARAAATQVANNPGTSYNPLFLYGGVGLGKTH 180
               PR++QSRIN  LTFD+ VTGKANQLARAAA QVANNPG+SYNPLFLYGGVGLGKTH
Sbjct: 115 DHT-PRRDQSRINTALTFDSFVTGKANQLARAAAIQVANNPGSSYNPLFLYGGVGLGKTH 173

Query: 181 IIHAIGNQVLVDNPGAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFF 240
           +IHAIGNQVL DNP  KIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFF
Sbjct: 174 LIHAIGNQVLADNPDVKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFF 233

Query: 241 GGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLTVAIEPPELE 300
           GGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEI+GMDDRLISRFDSGLTVA+EPPELE
Sbjct: 234 GGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSGLTVAVEPPELE 293

Query: 301 MRVAILMKKASAEDVVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHGKDITIDVVK 360
           MRVAIL+KKA  E V  SDDVAFFVAKHLRSNVRELEGALRKILAYSRFHGKDITI+VVK
Sbjct: 294 MRVAILLKKAVQEGVTFSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHGKDITIEVVK 353

Query: 361 EALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAMYLAKELTQK 420
           +ALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAMYLAKELTQK
Sbjct: 354 DALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAMYLAKELTQK 413

Query: 421 SLPEIGDLFGGRDHTTVLHAVRKIAADRAKSPECNHELHVLEQTLKG 467
           SLPEIG+LFGGRDHTTVLHAVRKIAADR KSPECNHELHVLEQTLKG
Sbjct: 414 SLPEIGELFGGRDHTTVLHAVRKIAADRGKSPECNHELHVLEQTLKG 460


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,021,686
Number of extensions: 39703
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 380
Effective length of database: 899,382
Effective search space: 341765160
Effective search space used: 341765160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)