BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4686.p
         (255 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093415|ref|YP_001098490.1| putative glutamine amidotransfe...   407   e-115

>gi|134093415|ref|YP_001098490.1| putative glutamine
           amidotransferase [Herminiimonas arsenicoxydans]
          Length = 255

 Score =  407 bits (1046), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 188/251 (74%), Positives = 215/251 (85%)

Query: 1   MCQLLGMNCNTPTDIVFSFTGFATRGGLTDHHRDGWGIAFFEGSGVRTFVDHQAAVDSPV 60
           MCQLLGMNCN PTDIVFSFTGFATR G TD H DGWGIAFFEG+GVR FVD+QAA+ SPV
Sbjct: 1   MCQLLGMNCNVPTDIVFSFTGFATRSGGTDAHNDGWGIAFFEGAGVRHFVDYQAAIASPV 60

Query: 61  AALIKRYPIKSQHVIAHIRKATQGRVTLANCHPFVRELWGRYWVFAHNGDLKNFTPTLDG 120
           A LI+R+PIKS++VIAHIRKATQG V L NCHPFVRELWG Y+VFAHNGDLK F P L+G
Sbjct: 61  AELIRRFPIKSKNVIAHIRKATQGHVALENCHPFVRELWGHYFVFAHNGDLKGFNPELNG 120

Query: 121 PFRPVGTTDSELSFCYILQELRRRFGDTLPLLAELRAALREIVDGIASHGTFNMLLSDGS 180
           P+RPVG TDSE +FCYILQELRR+FGD LP L  LRAA+ ++   IA+HGTFNM+LSDGS
Sbjct: 121 PYRPVGNTDSEAAFCYILQELRRQFGDALPALPPLRAAIEKLCAEIATHGTFNMMLSDGS 180

Query: 181 ALFTHCSTNLYYIVRQHPFTTAKLSDEDLSVDFSEVTTSNDRVAVIVTQPLTDNEVWTQY 240
           ALF HCSTNL+YIVRQ PF  A L DED+ VDFSEVTT +DRVA+IVT+PLT NE WTQ+
Sbjct: 181 ALFAHCSTNLHYIVRQFPFAEAVLCDEDMKVDFSEVTTPSDRVAIIVTEPLTTNETWTQF 240

Query: 241 QPGEMKLFVDG 251
           + GE+K+F+DG
Sbjct: 241 KTGELKVFIDG 251


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 491,713
Number of extensions: 19059
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 175
Effective length of database: 736,747
Effective search space: 128930725
Effective search space used: 128930725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)