BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4683.p (680 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096570|ref|YP_001101645.1| putative signal peptide [Hermin... 716 0.0 gi|134094666|ref|YP_001099741.1| hypothetical protein HEAR1443 [... 75 2e-14 >gi|134096570|ref|YP_001101645.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 673 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/671 (50%), Positives = 474/671 (70%), Gaps = 7/671 (1%) Query: 1 MSRLTKIFLWLLASLILLIAAAIIFLISFDWNRAKPWINQRVSTAIGRDFAIDGNLSLHW 60 M R KI LW L+ A +IFL++FDWN A+PWIN VS A GRDFAI+G+L+L W Sbjct: 1 MPRTKKIMLWSAIGSSALLFACVIFLLAFDWNHARPWINTHVSAATGRDFAINGDLALTW 60 Query: 61 QRPEPTSSGAESGFWASWIPWPRLQAENLRLGNPPAFAQSGQMATVQQITFTLNPLPLLV 120 QRP+ +G W W+P PRL A ++ L NP M V ITF++NPLPLL Sbjct: 61 QRPQ-----VSTGTWRDWVPVPRLSAHDVSLSNPDWSRSGPNMVEVGHITFSVNPLPLLN 115 Query: 121 HRISLPSLEVQDPSVSLLRNREAVNNWTFQSDSTGPSTWQLQLGRISLRQGKLALDDAVD 180 I +P+L++ DP V L R R+ NNWTF ++ PS W L L + +G+++L D + Sbjct: 116 KTIVIPTLQLDDPIVKLERLRDGRNNWTFTQNA--PSAWTLDLQGLLFYKGEVSLKDEIK 173 Query: 181 KIKLQGEIDTLDPEREKVYGLGWTLRGSFNGAPVSGQGKAGGVLSLQNQQQPYPLQAQVQ 240 I + IDTL P + + W L G+FNGA +SG GKAG +L+L++ +P+PLQA++ Sbjct: 174 HIDAKASIDTLQPSAANDFVMDWKLSGTFNGARISGDGKAGALLALKSVDKPFPLQARLN 233 Query: 241 VGKTRIGVRGTLTKPAELAALDVRLSLSGASMGNLYPLTGVLLPETPPFATEGRLIGKIA 300 VGKT I V+G++TKP +LAA+D++L LSGASM +LYPLTG+ LP+TP F+TEG L G Sbjct: 234 VGKTSIRVKGSVTKPQDLAAIDMQLHLSGASMADLYPLTGITLPKTPEFSTEGHLTGTTN 293 Query: 301 AGGSQWHYQDFSGKVGDSDLNGSLDYQTGGTRAQLTGALTSNVLRFDDLAPLIGADSNAE 360 A G +W Y F GKVG+SD++G+L Y++ R L+G + SN+LR DL +IGADSN Sbjct: 294 ALGGKWTYDKFRGKVGESDISGTLMYESKKPRPLLSGTVVSNLLRLSDLGTIIGADSNES 353 Query: 361 KAQRGAEERQPVDKILPVKTFSTEAWGALDADVRFTGKRIIRQQGLPITDLQAHLILKDK 420 K +RG QP +K+LPV+ F+TE WG++DADV+ +G++IIR LPI +L HL L D+ Sbjct: 354 KKERGVAASQPENKVLPVEKFTTERWGSIDADVKISGRKIIRDASLPIENLDTHLKLNDR 413 Query: 421 VLTLDPLNFGVAGGNLTSTIRLDGQAARMKADMKLSARKLKIQQLYPKLDASRTSFGEIN 480 ++TL PLNFGVAGGN+ + I+LDG+ +KA+ K+SAR LK++QL+P + SFGEIN Sbjct: 414 IVTLTPLNFGVAGGNMIANIKLDGRNDIIKAEAKISARHLKLKQLFPTFQPMQASFGEIN 473 Query: 481 GDARLSSSGNSVAAMLGSSNGEVKVLVNQGAISKFLLEAAGLNVGNVVISKLFGDKEVKL 540 GD LS++GNS+A+ML SSNGE+K L+++G ISK LLE GLN+GN+++S+LFGDK+V+L Sbjct: 474 GDTSLSATGNSIASMLASSNGEIKALISEGTISKLLLEQIGLNIGNIILSELFGDKQVQL 533 Query: 541 NCLAGDLPVNDGVMQVKTLLLDTEDALIVVDGSIDMKRELLDLNVHPRSKGLRIISLRSP 600 NC+A DL V +G++Q +TL++DT+DA + V G ID+ +E LDL ++P+SKGLRI+SLR+P Sbjct: 534 NCMASDLTVTNGIIQTRTLIVDTDDATLYVTGKIDLAQEKLDLTINPKSKGLRIVSLRTP 593 Query: 601 LYVKGSFKAPDVGVDKAVLALRAGGAVALGLLAPVTAILPLINIDGDQKADCGQLLEEVK 660 +YV G FK P V VDK VLAL+AG A+ LG LAPVTA+LPL+N+ ++ C LL+E + Sbjct: 594 IYVAGDFKNPRVNVDKGVLALKAGSAIVLGALAPVTALLPLVNVGSNEDNKCKVLLKEAQ 653 Query: 661 KAPLLPATGKS 671 P+ P GK+ Sbjct: 654 GKPVAPPPGKT 664 >gi|134094666|ref|YP_001099741.1| hypothetical protein HEAR1443 [Herminiimonas arsenicoxydans] Length = 645 Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 132/628 (21%), Positives = 244/628 (38%), Gaps = 53/628 (8%) Query: 1 MSRLTKIFLWLLASLIL-LIAAAIIFLISFDWNRAKPWINQRVSTAIGRDFAIDG-NLSL 58 M + KI LW L L L+ AA I D K + A+ R+ +D +LSL Sbjct: 1 MHKWQKIMLWGAGGLALALVIAASILYTQTDSAHLKIIARDQARQALARELMLDEIDLSL 60 Query: 59 HWQRPEPTSSGAESGFWASWIPWPRLQAENLRLGNPPAFAQSGQMATVQQITFTLNPLPL 118 P+P+L A+N+ L NP A+AQ V T L LPL Sbjct: 61 --------------------FPYPQLHAKNITLSNP-AWAQGQHFLEVSSATAQLALLPL 99 Query: 119 LVHRISLPSLEVQDPSVSLLRNREAVNNWTFQSDSTGPSTWQLQLGRISLRQGKLALDDA 178 L RI L L ++ +L + NW F D S + L +S+ + D Sbjct: 100 LSGRIILSGLHLEGLQANLEIAADGKRNWEF-PDVDAASLSDMTLTSMSVLHSNIRFRDG 158 Query: 179 VDKIKLQGEIDTLDPEREKVYGL---GWTLRGSFNGAPVSGQGKAGGVLSLQNQQQPYPL 235 K + L + +GL + ++ + + GK + L P Sbjct: 159 K---KESAQWQVLSLHADGGHGLQRVKFGMKVVRDNHLLQLDGKLDDLSQLGKPGAVSPG 215 Query: 236 QAQVQVGKTRIGVRGTLTKPAELAALDVRLSLSGASMGNLYPLTGVLLPETPPFATEGRL 295 G+ +I V G + L D+ S+ SM +++ G+ P P E Sbjct: 216 IVHATSGQAKITVSGKIPLDLALQNYDIAASIEAESMQDMFGFFGIQRPSPVPLKGE--- 272 Query: 296 IGKIAAGGSQWHYQDFSGKVGDSDLNGSLDYQTGGTRAQLTGALTSNVLRFDDLAPLIGA 355 K+ A + D +G +L+G + G++ L ++ + IG Sbjct: 273 -MKLHAANKKTEIADVRLHMGKLNLSGDGRWDDSGSKPVFHARLQADKIDMVQTFLDIGQ 331 Query: 356 DSNAEKAQRGAEERQPVDKILPVKTFSTEAWGALDADVRFTGKRIIRQQGLPITDLQAHL 415 S K Q + L + T+ A+V +I + G+ + D A + Sbjct: 332 PSLPPKKTGQLFRDQALAWPLLLDLEGTQG----TAEVNIAALKI--RSGIEVADATARM 385 Query: 416 ILKDKVLTLDPLNFGVAGGNLTSTIRLDGQAARMKADMKLSARKLKIQQLYPKLDASRTS 475 D + ++ + + GG + +G+ + +++++ L+ Q + Sbjct: 386 SFNDDRMKVEAFSGKLLGGRASGDALFEGRKEAVHLNLQMTDTTLE-QWFRQSGKNIAIT 444 Query: 476 FGEINGDARLSSSGNSVAAMLGSSNGEVKVLVNQGAISKFLLEAAGLNVGNVVISKLFGD 535 G + DAR+ ++G S+ + + +G V + V +K L AG ++ LF Sbjct: 445 GGAMKVDARIDATGTSMNDLAATLSGPVNIQVGA---AKILSPKAG--NAEFWLTGLFSA 499 Query: 536 KE---VKLNCLAGDLPVNDGVMQVKTLLLDTEDA-LIVVDGSIDMKRELLDLNVHPRSK- 590 ++ V L+C++ LP GV + + ++ DA ++ G+++++ + LDL R++ Sbjct: 500 RDSERVDLSCVSARLPFQSGVARGEAIVGARSDASQLLTRGTVNLRDQTLDLRGRIRARS 559 Query: 591 --GLRIISLRSPLYVKGSFKAPDVGVDK 616 L I + + + G P++ +D+ Sbjct: 560 GINLGISNFAGEVKIVGKLVNPELSMDE 587 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,223,900 Number of extensions: 51060 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 2 Length of query: 680 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 592 Effective length of database: 710,387 Effective search space: 420549104 Effective search space used: 420549104 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)