BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4681.p (294 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 99 3e-22 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 82 3e-17 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 69 3e-13 gi|134096588|ref|YP_001101663.1| putative transcriptional regula... 69 4e-13 gi|134094120|ref|YP_001099195.1| putative transcriptional regula... 63 2e-11 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 98.6 bits (244), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 134/259 (51%), Gaps = 21/259 (8%) Query: 1 MDLTQLRAFISVAHEGNLTRAAEKLHLTQPAVSLQIKALQESLGLALFNRSAAGMVLTAE 60 ++L QLR F++VA E + RAA +LH+TQP +S I++L+ LG+ LF R++ + LT Sbjct: 3 IELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPA 62 Query: 61 GNTLLPLAERIL---ADVQELRRHATGLRSSENALSGSLAIGTILDPEFIRLGAFLKLLV 117 G+ LLP A+RIL A + +L R T + SG L++ + ++ L FL+ Sbjct: 63 GSALLPEAQRILQQTAALPDLMRRVT------SGASGRLSLAFVSTADYSVLPPFLREFR 116 Query: 118 ERHPQLSTQLSHHMSGSVLNEVRAGKLDVGFFLGD-PGQG---FHALTLTSFTYNVIAPA 173 E +P + L + L+++ G++DVG + P + L + S + AP Sbjct: 117 ESYPGVEIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPK 176 Query: 174 GWKNRVSGK---GWKALARLPWIWTP---AESAHHRLLSRIFAQHQVKPQTVALVDQESS 227 G K + GK ++LA LP I P A + H +LS + + P Q + Sbjct: 177 GLKA-LKGKQSVALQSLAELPLIIFPRRIAPAFHDAILS-CYRDAGLTPHIGQEAIQMQT 234 Query: 228 MLDLVKSGVGLSLARESIA 246 ++ LV +G+G++L +S++ Sbjct: 235 IIGLVSAGMGIALVPQSVS 253 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 82.4 bits (202), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 6/183 (3%) Query: 1 MDLTQLRAFISVAHEGNLTRAAEKLHLTQPAVSLQIKALQESLGLALFNRSAAGMVLTAE 60 M LT+L+ ++VA E + AAE H+ QP +S+ IK L++ LG+ LF R + + +T Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60 Query: 61 GNTLLPLAERILADVQELRRHATGLRSSENALSGSLAIGTILDPEFIRLGAFLKLLVERH 120 G ++ AER+L ++ A + +++ L G +G I L +K ++ER Sbjct: 61 GVQIVAQAERVLEQTAAIKEIA---KQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERV 117 Query: 121 PQLSTQLSHHMSGSVLNEVRAGKLDVGFF-LGDPGQGFHALTLTSFTYNVIAPA--GWKN 177 PQ+ L + + +L ++R G++D L P QG + + V P W Sbjct: 118 PQMPLVLQENFTVKLLEQLRQGEIDAAIVALPIPDQGLLVQPVYDEPFVVAVPKHHPWAE 177 Query: 178 RVS 180 R S Sbjct: 178 RSS 180 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 68.9 bits (167), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 3 LTQLRAFISVAHEGNLTRAAEKLHLTQPAVSLQIKALQESLGLALFNRSAAGMVLTAEGN 62 L QL+ F +VA + +RAAE+LHLTQPAVS Q+K L++ GLALF + + LT G Sbjct: 50 LRQLKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGGT 109 Query: 63 TLLPLAERILADVQELRRHATGLRSSENALSGSLAIGTILDPEFIRLGAFLKLLVE---R 119 LL + I+ QE T + G L + I ++ F +LLVE Sbjct: 110 ELLHYSRTIIQQFQEAEDAMTQFKG---ITGGKLNVAVISAGDYF----FPRLLVEFARS 162 Query: 120 HPQLSTQLSHHMSGSVLNEVRAGKLDVGFFLGDP 153 H ++ LS H +LN++ D+ + P Sbjct: 163 HQGVTLNLSVHNREGLLNQLANNLTDLAIMVRPP 196 >gi|134096588|ref|YP_001101663.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 312 Score = 68.6 bits (166), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 131/299 (43%), Gaps = 16/299 (5%) Query: 1 MDLTQLRAFISVAHEGNLTRAAEKLHLTQPAVSLQIKALQESLGLALFNRSAAGMVLTAE 60 M + QL +++A E + RAAE ++QPA+S ++ L+ LG+A+ R T E Sbjct: 1 MFVRQLDYLVTLAREKHFARAAEICCVSQPALSAAVRNLETELGVAIVQRGQRFQGFTPE 60 Query: 61 GNTLLPLAERILADVQELRRHATGLRSSENALSGSLAIGTILDPEFIRLGAFLKLLVE-R 119 G +L A + LA ++ +R+ A+ S LSG+L +G I P + + + L + Sbjct: 61 GERILDWARQTLAALEGMRQEAS---MSRVKLSGTLRLGAI--PTTMPIVSLLTGPCRAQ 115 Query: 120 HPQLSTQLSHHMSGSVLNEVRAGKLDVGF-FLGDPG-QGFHALTLTSFTYNVIA----PA 173 H L ++ + ++ + +LD+G +L D GFH L Y ++A Sbjct: 116 HADLRQRVLSLSTEEIMRRLDDFELDIGLTYLEDQRLSGFHVQPLYRERYMLLARDQLAM 175 Query: 174 GWKNRVSGKGWKALARLPWIWTPAESAHHRLLSRIFAQHQVKPQTVALVDQESSMLDLVK 233 G + +S W+ A LP A + R++ F + V+P D ++ V+ Sbjct: 176 GDRTEIS---WEDAAELPLCLLTAHMQNRRIVDAAFRRADVQPNVAVETDSVFALYSQVR 232 Query: 234 SGVGLSLARES-IALNQAHAHGLVIADAVELSTELSFISLEKRQHEDVIKAVFQLLQQV 291 S+ S + L ++ I ELS + ISL V+ A + Q+ Sbjct: 233 HAGLFSVVPHSLLCLFESRDEMAAIPLVPELSRAIGMISLAHDPCSPVVTAARNIAAQI 291 >gi|134094120|ref|YP_001099195.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 284 Score = 62.8 bits (151), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 5/149 (3%) Query: 1 MDLTQLRAFISVAHEGNLTRAAEKLHLTQPAVSLQIKALQESLGLALFNRSAAGMVLTAE 60 +D LR+F++V G+ TRAA+ +HLTQ +S QI+ L+ +G L NRS + T E Sbjct: 2 LDPVLLRSFVAVVDTGSFTRAADSVHLTQSTISQQIRRLEMQVGCDLLNRSGRYVTTTLE 61 Query: 61 GNTLLPLAERILADVQELRRHATGLRSSENALSGSLAIGTILDPEFIRLGAFLKLLVERH 120 G LL A RI + E +++A G + +G D L L ++ + Sbjct: 62 GERLLRYAHRIAQLMDEAMEQI-----AQSAGKGEVRLGVPEDFVGRALTPTLSAFIDTY 116 Query: 121 PQLSTQLSHHMSGSVLNEVRAGKLDVGFF 149 + ++S MS + + G+LD+ Sbjct: 117 SAVRLEVSSGMSHELWQRFQRGELDLALI 145 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.133 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 539,146 Number of extensions: 21915 Number of successful extensions: 97 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 14 Length of query: 294 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 213 Effective length of database: 733,452 Effective search space: 156225276 Effective search space used: 156225276 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)