BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4679.p
         (539 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096567|ref|YP_001101642.1| choline dehydrogenase [Herminii...   649   0.0  

>gi|134096567|ref|YP_001101642.1| choline dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 537

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/533 (58%), Positives = 394/533 (73%), Gaps = 8/533 (1%)

Query: 2   QSAGQYDYIIIGAGTAGCVMANRLSRKTGKSVLLIEAGGRDDYLWIHIPVGYLYCINNPR 61
           +SAG+YDYII+GAGTAGCV+ANRL++    SVLL+EAG +DDY  +H+P+G+L+  +NPR
Sbjct: 3   ESAGKYDYIIVGAGTAGCVLANRLTQDPNISVLLLEAGAKDDYFRVHLPIGFLHVNDNPR 62

Query: 62  TDWMFRTEADAGLNGRSLIYPRGKVLGGCSSINGMIYMRGQARDYDHWAEVCGDDSWRWQ 121
           TDW +RTEADAGLNGRS+ YP GK+LGG SSINGMIY RGQA+DYD WAE+ GD SW W 
Sbjct: 63  TDWCYRTEADAGLNGRSVPYPSGKILGGSSSINGMIYQRGQAQDYDRWAELTGDASWAWD 122

Query: 122 NVLPWFRKSEDYHLGSSEFHGAGGEWRVEKQRLRWDILDAFRDAAAENGIAKVEDFNQGD 181
            VLP F+KSEDY  G+S+FHGAGG WRVEKQ+LRWDILDAFR AAA++GI  ++DF +G 
Sbjct: 123 QVLPLFKKSEDYSAGASDFHGAGGNWRVEKQKLRWDILDAFRAAAAQSGIPDMDDFGRGS 182

Query: 182 -NEGCSYFDVNQKRGVRWNASKAFLRPAMKDGNLTIMTGSHVSRLRMEQGEGGPVCTGVE 240
             EGC+YFD+NQKRG+R N +KAFLR  M+ GNL IMTGS V+RL M++ E G VCTGVE
Sbjct: 183 AEEGCAYFDINQKRGLRLNTAKAFLRTIMRRGNLDIMTGSQVTRLIMQKTESGNVCTGVE 242

Query: 241 FTGGGSQWFAQ-AKETILCAGAIGSPHILQMSGIADPALLQQHQIPVVHALPGVGENLQD 299
           F GGG +W A  ++ETIL AG  GSP ILQ SGI   +LLQQ  I ++  +PGVGENLQD
Sbjct: 243 FLGGGREWTADVSRETILTAGTFGSPQILQRSGIGPSSLLQQCGIALLQDVPGVGENLQD 302

Query: 300 HLQMRMVFKVDGARTLNAMASTLLGKMKIGLEYLFMQSGPMSMAPSQLGAFAKSDAQQAS 359
           HL ++M FK+ GA++LN M    LG   +GLEYL  ++G +S  P+ LGA  +SD  QA+
Sbjct: 303 HLPLQMTFKISGAKSLNTMRRGWLGAAAMGLEYLLKKNGLLSTVPTPLGAMVRSDPAQAT 362

Query: 360 ANLQYHVQPLSLEKFGDPLHAFPAFTASVCNLRPTSRGHVRLAAADPALAPRITTNYLST 419
            NL Y +QP S    G  L +FPAFT  VCN++P++RG+VR+ + D   +P I  NYLST
Sbjct: 363 PNLSYQIQPWSQASVGATLDSFPAFTIRVCNVKPSARGYVRITSPDAQTSPLIAMNYLST 422

Query: 420 EADLTVAADALRLTRRIVASPALARYRPEEYKPGLQYQSQAQLQRAAGDVGTTIFHPVGT 479
             D  VA DA+RLTR+IVA+PAL  Y  +E K G        LQ  AG +     +PVGT
Sbjct: 423 PEDRQVAQDAIRLTRKIVAAPALQAYALQEMKTG------DDLQSLAGSIAVAGANPVGT 476

Query: 480 CRMGRSDDVMAVVDAQCRVRGVAGLSVADASVMPSITSGNTNSPTVMIAEKVA 532
           C+MG  DD  AVVD++ RVRG+AGL VADASVMP IT+G+T + T++IAEK A
Sbjct: 477 CKMGSDDDEQAVVDSELRVRGIAGLRVADASVMPFITAGDTGATTILIAEKAA 529


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,045,288
Number of extensions: 44210
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 453
Effective length of database: 716,977
Effective search space: 324790581
Effective search space used: 324790581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)