BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4678.p (256 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 190 7e-50 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 174 5e-45 gi|134093663|ref|YP_001098738.1| putative branched-chain amino a... 143 8e-36 gi|134096408|ref|YP_001101483.1| high-affinity branched-chain am... 132 2e-32 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 119 2e-28 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 190 bits (482), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 103/251 (41%), Positives = 150/251 (59%), Gaps = 6/251 (2%) Query: 4 VILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQIL 63 +IL N++K F G A++ VN++I +G I+ LIGPNGAGKTT FN++T SG Sbjct: 9 IILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFE 68 Query: 64 FNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGL-----QRKLGTSFHFWKN 118 G+ + AP +A+ GI R+FQ +F M+ LENV +G Q G FH Sbjct: 69 LAGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKAA 128 Query: 119 GESLKQLDERAMQLLEEVDLTSFARTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQG 178 + + RAM+LL+ V + FA T L YG +R LEIA LA +P+L+ LDEP G Sbjct: 129 RQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAG 188 Query: 179 MGHEDVDRVTALIKKVSA-GRTILMVEHNMSVISGICDRISVLQRGALLAEGSYEEVSRN 237 M + + L+ K+ A G+TIL++EH++ ++ G+CDRI+VL G +AEG +V +N Sbjct: 189 MNATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPADVQKN 248 Query: 238 PQVMEAYMGST 248 P V+EAY+G + Sbjct: 249 PAVIEAYLGGS 259 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 174 bits (440), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 101/266 (37%), Positives = 154/266 (57%), Gaps = 30/266 (11%) Query: 6 LETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQILFN 65 L+T+++T F G A V+ ++ G +H++IGPNGAGK+T N ++ F PTSG I F Sbjct: 348 LQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSIEFM 407 Query: 66 GRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQR-----------KLGTSFH 114 G+ T Q+AR G+ R+FQ + +F M+ LENV +G +L + FH Sbjct: 408 GQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRLPSYFH 467 Query: 115 FWKNGESLKQLDER-----AMQLLEEVDLTSFARTTTVDLPYGRKRALEIATTLAMEPEL 169 DER A LLE V L +A +LP+G +R LEIA LAM P+L Sbjct: 468 -----------DERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKL 516 Query: 170 MLLDEPTQGMGHEDVDRVTALIKKVSAGR-TILMVEHNMSVISGICDRISVLQRGALLAE 228 +LLDEP G+ H +++ + LI+ +++ + T+L+VEH++ +I + D ++VL G ++A Sbjct: 517 LLLDEPAAGLTHGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTVLDYGKVIAS 576 Query: 229 GSYEEVSRNPQVMEAYMGSTSGELQG 254 G+ EV NP V+EAY G +GE +G Sbjct: 577 GTVAEVRSNPAVIEAYFG--TGETKG 600 >gi|134093663|ref|YP_001098738.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Herminiimonas arsenicoxydans] Length = 255 Score = 143 bits (361), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 144/257 (56%), Gaps = 9/257 (3%) Query: 3 DVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQI 62 DV+L+ + +++ + F A+ V+L + RG +++GPNGAGKTT N+LT PT+G + Sbjct: 5 DVLLQAQQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGNV 64 Query: 63 LFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGESL 122 FNG +I +A +G+ R+FQ++++FP ++V E + + L ++ + + Sbjct: 65 HFNGSNIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNMRWNGFGSLFGS 124 Query: 123 KQLDERAMQLLEEVDLTSFARTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHE 182 +++++ ++ + L + T LP+GR++ L++A+ A+ P++MLLDEPT G+ Sbjct: 125 RKVNDIVVRTADAFGLAPWLDTKGSSLPHGRRKLLDVASAFALHPKVMLLDEPTAGVSTA 184 Query: 183 DVDRVTALIKKVSAG---RTILMVEHNMSVISGICDRISVLQRGALLAEGSYEEVSRNPQ 239 D V + + + I++VEH+M ++S RI +Q G +A+ +E N + Sbjct: 185 DKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIIAMQAGKKIADLPRDEFFANEE 244 Query: 240 VMEAYMGSTSGELQGAH 256 ++ +G +GAH Sbjct: 245 IISIVVG------KGAH 255 >gi|134096408|ref|YP_001101483.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 276 Score = 132 bits (331), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 139/254 (54%), Gaps = 14/254 (5%) Query: 5 ILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQILF 64 ++ R+LT F G TA+ +NL I G + L+GPNG+GKTT FN+LT +SG I++ Sbjct: 22 LVSARDLTMRFGGLTALDQLNLHIVEGEVLGLLGPNGSGKTTFFNVLTGLYKASSGSIIY 81 Query: 65 NGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKL--GTSFHFWKNGESL 122 GR++ P +I R G+ R+FQ S + ++V +N+ IG + + G F+ ++ Sbjct: 82 QGREVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMQHGLFFNLFRRKAFR 141 Query: 123 KQLDERAMQLLEEVDLTS-------FARTTTVDLPYGRKRALEIATTLAMEPELMLLDEP 175 + D ++ + + S F T + +R +E+ L EP L+LLDEP Sbjct: 142 AEYDAYVAKVEALLHIFSPPLVARMFEPVETFSMI--DRRRIEVCRALLSEPRLLLLDEP 199 Query: 176 TQGMGHEDVDRVTALIKKVS---AGRTILMVEHNMSVISGICDRISVLQRGALLAEGSYE 232 + GM H++ + + I +V + T++++EH M+VI I DR V G +AEG+Y Sbjct: 200 SAGMTHDETEALMDDILQVRNKLSNLTVVLIEHEMNVIKRITDRCIVFNYGKKIAEGTYA 259 Query: 233 EVSRNPQVMEAYMG 246 E++ +P V AY+G Sbjct: 260 EITADPNVQTAYLG 273 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 119 bits (298), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 127/241 (52%), Gaps = 14/241 (5%) Query: 11 LTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQILFNGRDIT 70 L K + V V LQ+E G + L+GPNGAGKTT F ++ + +G+I +G DI+ Sbjct: 10 LQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELDGVDIS 69 Query: 71 MDAPAQIARQGIIRSFQISAVFPHMSVLENVR--IGLQRKLGTSFHFWKNGESLKQLDER 128 + A+ G+ Q ++VF +SV +N+R + LQR G + S +Q+++R Sbjct: 70 RQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKAL-------SKEQIEQR 122 Query: 129 AMQLLEEVDLTSFARTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQG---MGHEDVD 185 LL ++ + + L G +R +EIA LA P +LLDEP G + ++ Sbjct: 123 LDTLLADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQ 182 Query: 186 RVTALIKKVSAGRTILMVEHNMSVISGICDRISVLQRGALLAEGSYEEVSRNPQVMEAYM 245 R+ +K+ G +L+ +HN+ GICDR ++ +GA+LA G +++ + V Y+ Sbjct: 183 RIVRFLKERGIG--VLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRVYL 240 Query: 246 G 246 G Sbjct: 241 G 241 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 445,142 Number of extensions: 17277 Number of successful extensions: 213 Number of sequences better than 1.0e-08: 37 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 38 Length of query: 256 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 176 Effective length of database: 736,747 Effective search space: 129667472 Effective search space used: 129667472 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)