BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4677.p (242 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 169 1e-43 gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 164 5e-42 gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC t... 155 2e-39 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 138 2e-34 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 129 1e-31 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 169 bits (428), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/240 (40%), Positives = 142/240 (59%), Gaps = 6/240 (2%) Query: 7 SAPLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKG 66 SAPL L++ +L YG +++ V +GE V ++G NGAG+++ L++I G+V G Sbjct: 2 SAPL-LKVENLCVNYGHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPASG 60 Query: 67 SIKINGQETIHLATHKIAHYGVGYCPEERGIFSSLSAEENLMLPPFVSKTDRGMS----- 121 SI + G+ LA+H++ H GV PE R +F+ S E+NL+L FV G++ Sbjct: 61 SITLGGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAALRDD 120 Query: 122 IDEIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQAL 181 ID ++++FP LKERR Q LSGGEQQML +AR L + RLLL+DE+S GLAP I+ L Sbjct: 121 IDRMFQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKILDFL 180 Query: 182 ARMITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLG 241 ++ L +G +I++VEQ A + R YVME+G + S SS L + LG Sbjct: 181 FPVLVDLNRQGLSILLVEQIATRALAVTSRAYVMENGNVKISGRSSDLVKDAAVMEAYLG 240 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 164 bits (414), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 139/223 (62%), Gaps = 4/223 (1%) Query: 11 VLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRK--GSI 68 VL+I+ L+ YG + ++L+V QGE++TL+G NGAG+TTTL++I G + + G I Sbjct: 5 VLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRVDGHI 64 Query: 69 KINGQETIHLATHKIAHYGVGYCPEERGIFSSLSAEENLMLPPFVSKTDRGMSID--EIY 126 + GQ L + ++ + PE RG+F+ +S +ENL++ F +G++ D + + Sbjct: 65 EYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRNDKQGIADDMEKWF 124 Query: 127 EMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMIT 186 +FP LKER LSGGEQQMLA+AR L + +LLLLDE S GL+P++V+ + +I Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 187 TLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQL 229 ++ A+G TI++VEQN R A A R YVME G I + Q+ Sbjct: 185 SVAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQM 227 >gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 155 bits (391), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 132/218 (60%), Gaps = 2/218 (0%) Query: 26 ILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIKINGQETIHLATHKIAH 85 +L ++++++ GE+V L+GRNGAG++TT RSIMG + G+IK + THKI Sbjct: 17 VLRDISMHIEPGELVCLVGRNGAGKSTTFRSIMGFQPLKSGAIKWKRSAINGMQTHKIVE 76 Query: 86 YGVGYCPEERGIFSSLSAEENLMLPPFVSKTDRGMS--IDEIYEMFPNLKERRNSQGTRL 143 G+GY PE +F L+ E+N+ LP + K+ R IDE Y +FP LK+ + G +L Sbjct: 77 LGLGYTPEGSDVFGDLTVEDNIALPTWTRKSGRSAQERIDEAYAVFPKLKQYLHRGGQQL 136 Query: 144 SGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTLKAKGYTIVMVEQNFR 203 SGGE++M+++AR L LLLLDE EGL+P I+ ++ + ++ +G +++ E NF Sbjct: 137 SGGERKMVSIARALALDPELLLLDEAFEGLSPAIIPTISEGLQSILKQGRGVLLAESNFY 196 Query: 204 FAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLG 241 P ADR YV+E G+IV +Q EA T+ + G Sbjct: 197 HLPPFADRLYVIERGEIVFEGTLAQAEADAATMKIIKG 234 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 138 bits (348), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 2/220 (0%) Query: 12 LQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIKIN 71 L + L + Y + ++LH+V++ V G++ +LG NGAG++T +RSI+GL R+G I N Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWN 63 Query: 72 GQETIHLATHKIAHYGVGYCPEERGIFSSLSAEENLMLPPFVSKTDRGM--SIDEIYEMF 129 G+ TH I G+ PE R +F +S ENL L F+ + + +YE+F Sbjct: 64 GRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVTNSAVVRERLARVYEIF 123 Query: 130 PNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTLK 189 P LKER +SGGEQ M+++ R L +LL++DE S GL+P+ V+ +I + Sbjct: 124 PRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVIRRIN 183 Query: 190 AKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQL 229 A G T+++VEQN R ++ YV+ G+++ + +L Sbjct: 184 ALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEEL 223 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 129 bits (325), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 122/219 (55%), Gaps = 7/219 (3%) Query: 12 LQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIKIN 71 L +S LQ YG ++ +V L V GEV+ LLG NGAG+TT+ I+GLV + G I+++ Sbjct: 5 LIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELD 64 Query: 72 GQETIHLATHKIAHYGVGYCPEERGIFSSLSAEENLMLPPFVSKTD-RGMSIDEIYEMFP 130 G + HK A G+ Y P+E +F LS E+N+ + + + + +S ++I + Sbjct: 65 GVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQRLD 124 Query: 131 NL------KERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARM 184 L ++ R +Q LSGGE++ + +AR L T R +LLDE G+ P+ V + R+ Sbjct: 125 TLLADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQRI 184 Query: 185 ITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVES 223 + LK +G +++ + N R + DR Y++ G ++ S Sbjct: 185 VRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLAS 223 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 421,536 Number of extensions: 16640 Number of successful extensions: 182 Number of sequences better than 1.0e-08: 37 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 38 Length of query: 242 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 163 Effective length of database: 740,042 Effective search space: 120626846 Effective search space used: 120626846 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)