BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4676.p
         (402 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093984|ref|YP_001099059.1| putative amino acid ABC transpo...    62   4e-11

>gi|134093984|ref|YP_001099059.1| putative amino acid ABC
           transporter [Herminiimonas arsenicoxydans]
          Length = 381

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 32/229 (13%)

Query: 30  VIKIGFITDISGVYSDI--DGQGGAEAIKMAIADM---GGAINGKKI--ELVVADHQNKA 82
           VIKIG +  I+G  + +  D + GA   +MA+ D+   G  I GKK+  +L+  D  +  
Sbjct: 28  VIKIGSVAPITGTDAHMGKDNENGA---RMAVEDLNAKGTTIGGKKVKFQLLAEDDASDP 84

Query: 83  DVAASKAREWFDQQGVDVLIGGTNSGTALASAKVAAEKKKVYIAVGAGTARLTNEECSP- 141
             A + A++  D  GV  +IG  NSGT + ++++ A          AG  +++    +P 
Sbjct: 85  KQATAAAQKLVDA-GVVAVIGHLNSGTTIPASRIYAN---------AGIPQVSPSATNPK 134

Query: 142 YTMH---YAYDTVA----LAKGTGSAVVKQ-GGKSWFFLTADYAFGHSLEADTANVVKAS 193
           YT      A+  VA    L +  G   VK  GGKS   +    A+G  +  + A  VKA+
Sbjct: 135 YTQQGFKTAFRVVANDAQLGQVLGQYAVKTLGGKSVAVIDDRTAYGQGVADEFAKGVKAA 194

Query: 194 GGTVVGSVKHPLGASDFSSFLLQAQSSKAQII---GLANAGGDFINSVK 239
           GG++V S      A+DF+S L   ++ K  II   G+   GG  +  +K
Sbjct: 195 GGSIVASQYTNNKATDFNSILTSIKAKKPDIIFFGGMDAVGGPMLRQMK 243


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 682,557
Number of extensions: 26342
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 3
Length of query: 402
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 318
Effective length of database: 723,567
Effective search space: 230094306
Effective search space used: 230094306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)