BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4671.p
         (220 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096564|ref|YP_001101639.1| 16S rRNA methyltransferase GidB...   296   4e-82

>gi|134096564|ref|YP_001101639.1| 16S rRNA methyltransferase GidB
           [Herminiimonas arsenicoxydans]
          Length = 218

 Score =  296 bits (759), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 145/213 (68%), Positives = 171/213 (80%)

Query: 6   DLNDLTRTLKEGAMAMGLTLSAAQLEQLMAYQALLAKWNKVYNLTALRDPAQMVTHHLLD 65
           D   LT  L EGA  + LTLS AQ+ +L+ Y AL+ KWN VYNLTA+RDP QMVT HLLD
Sbjct: 5   DRPALTAILVEGARGLSLTLSEAQITKLIDYLALMVKWNSVYNLTAVRDPLQMVTQHLLD 64

Query: 66  SLAAVSAFAGAQRVLDVGAGGGLPGIVLAIWAAQAQPQMKITLVDTVQKKTAFLNQVKAQ 125
           SLAAVSAFAGA+ VLDVGAGGGLPGIVLAIWAA+A+P+M+++L+DTV KKTAFL QVKA+
Sbjct: 65  SLAAVSAFAGAKNVLDVGAGGGLPGIVLAIWAAEAEPEMRVSLIDTVHKKTAFLTQVKAE 124

Query: 126 LQLGNVTVLHARVEQLPVEQQYDVITSRAFAELKDFITWSNHLLQPGGKYIALKGVLPQE 185
           L L NV+V  ARVEQ     ++DVITSRAFAEL DF+ WS HLL  GG++IALKGV P  
Sbjct: 125 LGLANVSVHTARVEQWNAPHKFDVITSRAFAELNDFVNWSGHLLDEGGEFIALKGVAPDT 184

Query: 186 EIDRLPAGWQVQHVQPLQVPGLDAERHLIFMER 218
           E+  LPAGW+V+ V+PLQVP L AERHLIF+ER
Sbjct: 185 EVAHLPAGWKVREVRPLQVPTLQAERHLIFIER 217


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 417,019
Number of extensions: 16670
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 142
Effective length of database: 743,337
Effective search space: 105553854
Effective search space used: 105553854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)