BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4670.p
         (181 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096563|ref|YP_001101638.1| outer membrane lipoprotein [Her...   197   2e-52

>gi|134096563|ref|YP_001101638.1| outer membrane lipoprotein
           [Herminiimonas arsenicoxydans]
          Length = 178

 Score =  197 bits (502), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 92/156 (58%), Positives = 115/156 (73%), Gaps = 1/156 (0%)

Query: 26  AQEVKTVPSVDLKRYAGKWYEIAKLPNSFQKKCISGTSAEYIARDDGMIDVTNRCKTAEG 85
           AQEV+ V  VDL RY GKWYEIA+ PN FQK C++  SA+Y  R+DG IDV NRC+ A+G
Sbjct: 21  AQEVRPVAQVDLARYVGKWYEIARFPNGFQKGCVANVSAQYNKREDGEIDVINRCREADG 80

Query: 86  -IDEAKGVARVVPGSNNSKLEVRFAPAWLSWIPMVWGDYWIMDLDAQYTLATVGSPSREY 144
             +EA G ARV    +N+KL+VRFAP WLSW+  VW DYWI+DL   Y++A VG  SREY
Sbjct: 81  KQEEAIGRARVADTVSNAKLKVRFAPDWLSWLSFVWADYWIIDLAPDYSIAAVGEASREY 140

Query: 145 LWILSRTPTISDEQYETALNNATKQGFDTSRVVKSQ 180
           LWIL+RTPTI   +YE  +N  T QGFDTS++VK++
Sbjct: 141 LWILARTPTIPTSEYEAVVNRITAQGFDTSKLVKTR 176


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.130    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 333,284
Number of extensions: 12980
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 105
Effective length of database: 749,927
Effective search space: 78742335
Effective search space used: 78742335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)