BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4668.p
         (256 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096562|ref|YP_001101637.1| chromosome partitioning protein...   457   e-130
gi|134093346|ref|YP_001098421.1| ATPase domain-containing protei...    75   4e-15

>gi|134096562|ref|YP_001101637.1| chromosome partitioning protein
           [Herminiimonas arsenicoxydans]
          Length = 256

 Score =  457 bits (1177), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 217/256 (84%), Positives = 235/256 (91%)

Query: 1   MAKIFCVANQKGGVGKTTTAVNLAAGLAQLNQRVLLADLDPQGNATMGSGVNKATLEGSI 60
           MAKIFCVANQKGGVGKTTTAVNLAA LAQLNQRVLL DLDPQGNATMG+G+NKA L+ SI
Sbjct: 1   MAKIFCVANQKGGVGKTTTAVNLAAALAQLNQRVLLVDLDPQGNATMGAGINKAELKSSI 60

Query: 61  YEVLLGMSDIRSVRKRSEAGGFDVLPANRELAGAEVEMVELEQREARLKNAFAQVADDYD 120
           YEVLLGM+D+ + R  SE GGFDVLPANRELAGAEVEMVEL+ RE RLK+A   V  +YD
Sbjct: 61  YEVLLGMADVATARVTSETGGFDVLPANRELAGAEVEMVELDNREKRLKDALNAVDAEYD 120

Query: 121 FILIDCPPALSMLTLNGLCSAHGVIIPMQCEYYALEGLSDLVNTIKKVHAKLNPELKVIG 180
           F+LIDCPPALSMLTLNGLC+AHGVIIPMQCEYYALEGLSDLVNTIKKVHAKLN +LK+IG
Sbjct: 121 FMLIDCPPALSMLTLNGLCAAHGVIIPMQCEYYALEGLSDLVNTIKKVHAKLNTDLKIIG 180

Query: 181 LLRVMFDPRMTLSQQVSDQLEQHFGDKVFKTVIPRNVRLAEAPSYGLPGVTFDPLSKGAQ 240
           LLRVMFDPRMTLSQQVS QLEQHFGDKVFKT+IPRNVRLAEAPSYG+PG+ FDP SKGAQ
Sbjct: 181 LLRVMFDPRMTLSQQVSSQLEQHFGDKVFKTIIPRNVRLAEAPSYGMPGINFDPSSKGAQ 240

Query: 241 AYIAFGAEMVERIKTL 256
           AY+ FGAEMVERIKT+
Sbjct: 241 AYLVFGAEMVERIKTI 256


>gi|134093346|ref|YP_001098421.1| ATPase domain-containing protein
           [Herminiimonas arsenicoxydans]
          Length = 227

 Score = 74.7 bits (182), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 11/200 (5%)

Query: 49  SGVNKATLEGSIYEVLLGMSDIRSVRKRSEAGGFDVLPANRELA------GAEVEMVELE 102
           +GV   +   +I  +      +R + + S   G  ++PA+ EL+      G   ++V + 
Sbjct: 5   TGVMANSGNDTILSLFQHNRTLRELVRVSPTSGIGIIPAHMELSKIDTMFGKGYDIVNML 64

Query: 103 QREARLKNAFAQVADDYDFILIDCPPALSMLTLNGLCSAHGVIIPMQCEYYALEGLSDLV 162
               R +    +  D+   ++IDC P + +L+LN + +   +IIP+  ++ + +G   + 
Sbjct: 65  NANLRGE----KFNDENTPVMIDCCPLIGVLSLNAIFACDCLIIPVSADHLSAKGAIQIE 120

Query: 163 NTIKKVHAKLNPELKVIGLLRVMFDPRMTLSQQVSDQLEQHFGDKVFKTVIPRNVRLAEA 222
            T+K +   L   +    LL   FD R +++ +V   LE+ FG +V +T I  NV LAE+
Sbjct: 121 KTLKALEPVLKRRVNRRYLL-TRFDGRRSMAWEVLKILEERFGAEVCRTRISENVSLAES 179

Query: 223 PSYGLPGVTFDPLSKGAQAY 242
           P+Y        P S+GAQ Y
Sbjct: 180 PAYNKTIFEHAPHSRGAQDY 199


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 465,665
Number of extensions: 18521
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 3
Length of query: 256
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 176
Effective length of database: 736,747
Effective search space: 129667472
Effective search space used: 129667472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)