BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4667.p
         (303 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096561|ref|YP_001101636.1| chromosome partitioning protein...   451   e-128

>gi|134096561|ref|YP_001101636.1| chromosome partitioning protein
           [Herminiimonas arsenicoxydans]
          Length = 299

 Score =  451 bits (1161), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/295 (78%), Positives = 256/295 (86%), Gaps = 5/295 (1%)

Query: 6   KKSKGLGRGLDALLGGSSDITEEVQAQAAQGLPTVMAVTELQAGKYQPRTRMDEGALNEL 65
           KK KGLGRGL+ALLGG++D  E V A    G P+ + V+++QAGKYQPRTRMDEGALNEL
Sbjct: 4   KKQKGLGRGLEALLGGATDFNEAVAA--IPGAPSTLQVSDMQAGKYQPRTRMDEGALNEL 61

Query: 66  AASIKEQGLLQPILIRAIGQKNGRDIYEIIAGERRFRAAKIAGLTEVPVLVKNVDDQTTA 125
           AASIK QGLLQ IL+R I   NGRD YEIIAGERRFRAA++AGLTEVPVLVK VDD+  A
Sbjct: 62  AASIKAQGLLQAILVRPIAAHNGRDRYEIIAGERRFRAAQLAGLTEVPVLVKEVDDEAAA 121

Query: 126 AMALIENMQREDLNPLEEAQGIHRLITDFAFTHEQAALAVGRSRSAVSNLLRLLNLAKPV 185
           AMALIEN+QREDLNPLEEAQGIHRLI DF FTHEQAA AVGRSRSAVSNLLRLLNLAKPV
Sbjct: 122 AMALIENIQREDLNPLEEAQGIHRLIADFNFTHEQAAHAVGRSRSAVSNLLRLLNLAKPV 181

Query: 186 QTMLMAGDIDMGHARALLAVDSATQIQLANQIVAKRMSVRDAEKLVTRASAEQA--AKPR 243
           QTMLMAGDIDMGHARALLAVD+ TQI LANQ+VAKRMSVR+AEKLV RA+ EQA  +KPR
Sbjct: 182 QTMLMAGDIDMGHARALLAVDAGTQITLANQVVAKRMSVREAEKLVVRATLEQATGSKPR 241

Query: 244 -EAKDKSRDIARLEEELSDLLATQVSIKTGARNKGQLIINFNDLDALDGVIARLR 297
              K+KSRDIARLEEELSD LATQV+IK GA+NKGQL+I F  LDALDG+IA+LR
Sbjct: 242 ANGKEKSRDIARLEEELSDALATQVAIKLGAKNKGQLVIEFAGLDALDGIIAKLR 296


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.130    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 459,521
Number of extensions: 16954
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 222
Effective length of database: 733,452
Effective search space: 162826344
Effective search space used: 162826344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)