BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4666.p (513 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096439|ref|YP_001101514.1| glucan biosynthesis protein G [... 468 e-133 gi|134094727|ref|YP_001099802.1| glucan biosynthesis protein D [... 359 e-100 >gi|134096439|ref|YP_001101514.1| glucan biosynthesis protein G [Herminiimonas arsenicoxydans] Length = 510 Score = 468 bits (1205), Expect = e-133, Method: Compositional matrix adjust. Identities = 222/487 (45%), Positives = 318/487 (65%), Gaps = 8/487 (1%) Query: 18 GFDLNQAVARAQTLAAKPYQKPVSNLSPTFAAMQFADYMKIQPKSDKFEWRNQPTPFKLA 77 FD N RA+ LAA Y++P N+S + + Y I+ K + WR+ PF+L Sbjct: 30 AFDFNDVAKRAKQLAATSYKEPQKNISKGLENLDYDQYRDIRYKRESAYWRSAKLPFELT 89 Query: 78 FYHQGMQFNAPVVIHEIVDGRVQDVGYSTDRFDFGDLKLARESTAHLGYAGFRVVYPINR 137 F+HQG QF + V I+E+ R + + + FD+G KL+ + H G++GFRV Y +N+ Sbjct: 90 FFHQGRQFESAVKINEVTGNRARPIPFDARAFDYGANKLSAQDLKHAGFSGFRVHYALNK 149 Query: 138 DDKEDEIMSVLGASYFRVIGKGQVYGLSARGLAIDTAMLSGEEFPHFTEFWIQRPAPGEQ 197 +DE++ LGASY R +GK Q+YGLSARGLA+DTA+ SGEEFP F EFWI+RPA + Sbjct: 150 PTYKDELVVFLGASYLRAVGKQQIYGLSARGLAVDTALNSGEEFPRFVEFWIERPAANSK 209 Query: 198 QLTFYALLDSPRATGAYKFTLTPGKDALLDVQARVFLRGEVARLGIAPLTSMFLFGPNQQ 257 QLT YALLDS R +GAY+F + PG+ + +V+++++LR V++LGIAPLTSM+ FG NQ+ Sbjct: 210 QLTIYALLDSRRVSGAYRFIVKPGEQTITEVKSQLYLRENVSKLGIAPLTSMYFFGENQR 269 Query: 258 SSRRNFRPAIHDSNGLAIHTGSGEWLWRPLNDPQNVEVSSFEVTNPRGFGLLQRGRDFSD 317 ++ ++RP +HDS+GL+I +G+GEW+WRPL +P+ + V+S+ ++NP GFGL+QR ++ Sbjct: 270 AAVEDYRPEVHDSDGLSIQSGTGEWIWRPLVNPKRLLVTSYTLSNPAGFGLMQRDEKQAN 329 Query: 318 YEDLKDRYDLRPSAWIEPRGDWGKGAVQLVEIPTADETNDNIVAYWLPAQLPARGTPVAY 377 YEDL+ RY+ RPSAW+EP G WG G V+LV+IPT +E NDNIV+YW+P QLP G P+ + Sbjct: 330 YEDLEARYEARPSAWVEPMGKWGAGRVELVQIPTPNEFNDNIVSYWVPDQLPKPGQPINF 389 Query: 378 DYRIHWTMDEPAILNNEVGWVKQTFHTDGELTQANLIRAFDGTTALLVDFTGGPLGNLPA 437 DYR+ W + + WV QT G L R D + AL VDF G LP Sbjct: 390 DYRMSWHKGAQKV--PPLSWVTQTRRGHGYL------RKPDDSIALFVDFEGPIFKKLPK 441 Query: 438 GTAVQPQVNVSNNGELIDAQLQPNPAINGWRLTLRVKIRNVAQAVELRAALTANGKPLTE 497 + +V+ +NGE++++ + NPA GWR LR++ + + VELR L L+E Sbjct: 442 DAKIDVRVSADSNGEILESHVVQNPATGGWRAALRIRRVDDKKPVELRGFLHTVNTTLSE 501 Query: 498 TWSYQLP 504 TWSY LP Sbjct: 502 TWSYILP 508 >gi|134094727|ref|YP_001099802.1| glucan biosynthesis protein D [Herminiimonas arsenicoxydans] Length = 528 Score = 359 bits (921), Expect = e-100, Method: Compositional matrix adjust. Identities = 199/497 (40%), Positives = 284/497 (57%), Gaps = 13/497 (2%) Query: 19 FDLNQAVARAQTLAAKPYQKPVSNLSPTFAAMQFADYMKIQPKSDKFEWRNQPTPFKLAF 78 FD RA+ LA +PY P + A+ + Y I + D W F+ F Sbjct: 42 FDYAWLKGRARALAGQPYHFPSIEVPAAVKALDWDQYQSIAYRDDHALWGGDKLRFQTKF 101 Query: 79 YHQGMQFNAPVVIHEIVDGRVQDVGYSTDRFDFGDLKL-ARESTAHLGYAGFRVVYPINR 137 +H GM V IHE+ DG+ +++ Y F++G L + LG+AGFRV + Sbjct: 102 FHLGMYATQSVKIHELEDGKARELAYDPAMFNYGKSGLKGSDLPKDLGFAGFRVNF---H 158 Query: 138 DDKEDEIMSVLGASYFRVIGKGQVYGLSARGLAIDTAMLSGEEFPHFTEFWIQRPAPGEQ 197 D ++ + LGASYFR +G YGLSARGLAID M EEFP FTEFW++RPA Sbjct: 159 TDLVRDVAAFLGASYFRAVGGDWQYGLSARGLAIDCGMERPEEFPRFTEFWLERPALQSG 218 Query: 198 QLTFYALLDSPRATGAYKFTLTPGKDALLDVQARVFLRGEVARLGIAPLTSMFLFGPNQQ 257 +L YALLDSP GAY+F + PG L+D+ ++ R + R+GIAPLTSMFL N + Sbjct: 219 KLVVYALLDSPSIAGAYRFEIMPGATLLMDIDLALYPRKAIERMGIAPLTSMFLTAENDR 278 Query: 258 SSRRNFRPAIHDSNGLAIHTGSGEWLWRPLNDPQNVEVSSFEVTNPRGFGLLQRGRDFSD 317 ++RP IHDS+GLA++TG GEW+WRPL +P+++ +++ +PRGFGL+QR R+F Sbjct: 279 RISNDWRPEIHDSDGLAMNTGKGEWIWRPLVNPEHLRFNAYVDESPRGFGLMQRDRNFDH 338 Query: 318 YEDLKDRYDLRPSAWIEPRGDWGKGAVQLVEIPTADETNDNIVAYWLPAQLPARGTPVAY 377 Y+D Y+ RPS W+EP+ WGKG++QLVEIPT DET DNIVA+W P P G + + Sbjct: 339 YQDDGVFYERRPSLWVEPKSGWGKGSIQLVEIPTVDETFDNIVAFWNPEAKPQPGQELLF 398 Query: 378 DYRIHWTMDEPAILNNEVGWVKQTFHTDGELTQANLIRAFDGTTALLVDFTGGPLGNLPA 437 Y+++W PA+ + V T G + R + + VDF GG L L Sbjct: 399 GYKLYWGSKMPAL--PQAATVTATRTGIGGVVGKK--RTY-FSWRFAVDFVGGDLALLGK 453 Query: 438 GTAVQPQVNVSNNGELIDAQLQPNPAINGWRLTLRVKIR-NVAQAVELRAALTANGKPLT 496 V+P ++ + G + +P + G+R +KI N+ A++LR L+A+G+ L+ Sbjct: 454 NVKVEPVISAT-QGTIEITSARPLDDVKGYRAMFDLKIADNIQGAIDLRLYLSADGQTLS 512 Query: 497 ETWSYQLPPRSDVQRTF 513 ETW YQ P + QR+F Sbjct: 513 ETWLYQWTPPA--QRSF 527 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,063,118 Number of extensions: 47230 Number of successful extensions: 94 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 92 Number of HSP's successfully gapped: 2 Length of query: 513 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 427 Effective length of database: 716,977 Effective search space: 306149179 Effective search space used: 306149179 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)