BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4664.p (621 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding pro... 956 0.0 gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding pro... 263 2e-71 gi|134096472|ref|YP_001101547.1| putative ABC transporter [Hermi... 241 8e-65 gi|134094288|ref|YP_001099363.1| putative ABC transporter permea... 229 2e-61 gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/... 213 3e-56 >gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 618 Score = 956 bits (2471), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/614 (76%), Positives = 544/614 (88%), Gaps = 2/614 (0%) Query: 1 MFSWFEKLVHPYPETHPLPPPRGFMRFIWFCTKGVRPYIAAMTLMTAIIGVFEALLFAAL 60 M WFE+L+HPY + P PPRGF+ F+W CTKG R Y+AAMT++TA+ G FEALLFA + Sbjct: 1 MLGWFERLLHPYQDEIPATPPRGFIAFVWACTKGARRYVAAMTILTAMTGAFEALLFAMM 60 Query: 61 GRIVDWLAKVQPSQLWAQEGHTLVWLVVILAASPLLIALQTLYKHQTLAGNFPMLLRWNF 120 GRIVDWLA+V+P+ LW QE ++L+ L ++ S +L+ALQT +KHQTLAGNFPM LRWNF Sbjct: 61 GRIVDWLARVEPAMLWTQERNSLLLLAAVVMLSTVLVALQTFFKHQTLAGNFPMQLRWNF 120 Query: 121 HRLMLSQSMSFYQNEFAGRVATKVMQSALAVRDFCMIVGDILVFITIYFATLVGVVGSFD 180 HR+ML+QSM FYQ+EFAGRVATKVMQ+ALAVRD CMI GDILVF+ IYF TLV VVG+F+ Sbjct: 121 HRMMLNQSMGFYQDEFAGRVATKVMQTALAVRDVCMITGDILVFVIIYFVTLVSVVGTFN 180 Query: 181 MWMLAPFFIWLAAFAVAMRYFVPRLSAVARNQADARSLMTGRITDAYTNIATVKLFSHTG 240 WM+ PF W A + +A+RYFVPRLS V+R QADARSLMTGRITDAYTNI+TVKLFSH G Sbjct: 181 TWMMLPFLSWAAVYGLALRYFVPRLSHVSRAQADARSLMTGRITDAYTNISTVKLFSHAG 240 Query: 241 READYARSAMREFLTTVNRQMRLVSGFEVVNHMLNMVLIIGATGVSLYLWTQGKVGVGAV 300 REA YAR+AM+EF++ V+ QMRLVSGFE+VNH+L+M+LI+ GV+L+LWTQG+VGVGAV Sbjct: 241 REAGYARTAMQEFMSAVHGQMRLVSGFEIVNHLLSMLLILSTAGVALWLWTQGQVGVGAV 300 Query: 301 AASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINTLARAHDVKDAPDAKPLQVRQGEL 360 AA+TAMALRLNGI+HWVMWEM++LFE VGTVQDGINTLARAH V DA DA PLQV +GEL Sbjct: 301 AAATAMALRLNGISHWVMWEMATLFEQVGTVQDGINTLARAHTVTDAADAAPLQVMRGEL 360 Query: 361 RFEGVSFSYGGAAPRPVVDQLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRIT 420 +F+ V F+YGG R V+DQ +L IRPGEK+GLVGRSGAGKSTIVNLLLRFYD+E GRI Sbjct: 361 KFDHVGFAYGGT--RAVIDQFNLTIRPGEKVGLVGRSGAGKSTIVNLLLRFYDLEQGRIL 418 Query: 421 IDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENVIYGRPEASDAEMIHAAQRAEAHDF 480 IDGQDIAHVTQ+SLRAQ+GMVTQDTSLLHRSVR+N++YGRP+AS+A+MI AA+RAEAHDF Sbjct: 419 IDGQDIAHVTQNSLRAQVGMVTQDTSLLHRSVRDNILYGRPDASEADMIDAAKRAEAHDF 478 Query: 481 IGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEA 540 I TL+DAKGRT YDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEA Sbjct: 479 ILTLSDAKGRTAYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEA 538 Query: 541 AIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGTHAELLAANGLYARLWS 600 AIQTSLY+LMEGKTVVAIAHRLSTIAAMDRLIVLD+GRIVEQG+H ELL NGLYARLW+ Sbjct: 539 AIQTSLYELMEGKTVVAIAHRLSTIAAMDRLIVLDKGRIVEQGSHRELLQQNGLYARLWA 598 Query: 601 HQSGGFLGEEEEDE 614 HQSGGFLGEE +DE Sbjct: 599 HQSGGFLGEEADDE 612 >gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 648 Score = 263 bits (671), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 156/399 (39%), Positives = 231/399 (57%), Gaps = 19/399 (4%) Query: 210 RNQADARSLMTGRITDAYTNIATVKLFSHTGREADYARSAMREFLTTVNRQMRLVSGFEV 269 R D S + D+ N TVK F + EA ++ + T + + V Sbjct: 230 RTMNDLDSKANTKAIDSLINYETVKYFGNEDYEAKRYDEGLKRYETAAVKSQ---TSLSV 286 Query: 270 VNHMLNMVLIIGATGVSLYLW--TQGKVG----VGAVAASTAMALRLNGIAHWVMWEMSS 323 +N + ++ A V+L LW TQG + +G + A ++L +++ Sbjct: 287 LNTGQSSII---AVAVTLILWRATQGVISGTMTLGDLVLVNAFMIQLYIPLNFLGVIYRE 343 Query: 324 LFEHVGTVQDGINTLARAHDVKDAPDAKPLQVRQGELRFEGVSFSYGGAAPRPVVDQLDL 383 + + + ++ + L + ++ D P+ + L V+ E++F V FSY A R ++ +D Sbjct: 344 IKQSLADMERLFSLLDQHREIADKPNTQALVVQGAEVKFSHVGFSY--EAKRQILFDVDF 401 Query: 384 VIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQ 443 I G +VG SG+GKST+ LL RFYD+ G I IDGQD+ VTQ SLR IG+V Q Sbjct: 402 TIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNEGAILIDGQDVRDVTQASLRNAIGIVPQ 461 Query: 444 DTSLLHRSVRENVIYGRPEASDAEMIHAAQRAEAHDFIGTLADAKGRTGYDAHVGERGVK 503 DT L + ++ N+ YG+P AS +++ AA+ A HDFI +L D GY VGERG+K Sbjct: 462 DTVLFNDTIEYNIAYGKPGASKDDIVAAAKSAYIHDFIESLPD-----GYATMVGERGLK 516 Query: 504 LSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLS 563 LSGG++QR+AIAR +LK IL+ DEATSALDS+ E AIQ L ++ + +T + IAHRLS Sbjct: 517 LSGGEKQRVAIARTLLKHPAILIFDEATSALDSKAEQAIQAQLKEIAKDRTTMVIAHRLS 576 Query: 564 TIAAMDRLIVLDQGRIVEQGTHAELLAANGLYARLWSHQ 602 TI +++VLD GRIVE+GTHA+LLAA+G YA++W+ Q Sbjct: 577 TIVDAAQILVLDHGRIVERGTHAQLLAADGAYAQMWARQ 615 >gi|134096472|ref|YP_001101547.1| putative ABC transporter [Herminiimonas arsenicoxydans] Length = 726 Score = 241 bits (615), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 155/393 (39%), Positives = 223/393 (56%), Gaps = 22/393 (5%) Query: 217 SLMTGRITDAYTNIATVKLFSHTGREADYARSAMREFLTTVNRQMRLVSGFEVVNHMLNM 276 S +T + D I VK F+ REA R A + L +R ++ S F +L Sbjct: 331 SQVTNVLADTIPGIRVVKAFAQEKREAVRFREANKHNLAINDRVNKVWSLFSPTVTLLTE 390 Query: 277 VLIIGATGVSLYLWTQGKVGVGAVAASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGIN 336 + ++ + ++ +QG + VG + A A R + S+ V Q Sbjct: 391 IGLLVVWALGIWQVSQGLITVGVLTAFLAYITRFYT-------RLDSMSRIVSVTQKAAT 443 Query: 337 TLARAHDVKD----APDA-KPLQVR--QGELRFEGVSFSYGGAAPRPVVDQLDLVIRPGE 389 R D+ D P+A P+ + QG++ + + F YG R V+ LDL I+PGE Sbjct: 444 GAKRIFDILDHVSSVPEATNPVHLTNVQGKITIKNIGFRYGN---RAVIRGLDLDIQPGE 500 Query: 390 KIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLH 449 IGLVG SG+GKST+VNL+ RFYD+ G I +DG D+ + R IG+V Q+ L Sbjct: 501 MIGLVGHSGSGKSTLVNLICRFYDVSDGAILVDGIDVRSIPIPEYRRNIGLVLQEPFLFF 560 Query: 450 RSVRENVIYGRPEASDAEMIHAAQRAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQR 509 ++ +N+ YG+P+AS E+I AA+ A AH+FI L GYD+ VGERG LSGG+R Sbjct: 561 GTIADNIAYGKPDASREEIIAAARAANAHEFILRLPH-----GYDSMVGERGQTLSGGER 615 Query: 510 QRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMD 569 QRI+IAR +L D IL+LDEATS++D+ E IQ +L L+ G+T +AIAHRLST+ D Sbjct: 616 QRISIARALLIDPHILILDEATSSVDTTTEREIQKALDNLVRGRTTIAIAHRLSTLRRAD 675 Query: 570 RLIVLDQGRIVEQGTHAELLAANGLYARLWSHQ 602 R++V+D+G+IVE G+H ELLA G Y +L+ Q Sbjct: 676 RIVVMDRGQIVEVGSHDELLAREGAYYKLYQAQ 708 >gi|134094288|ref|YP_001099363.1| putative ABC transporter permease [Herminiimonas arsenicoxydans] Length = 579 Score = 229 bits (585), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 173/497 (34%), Positives = 265/497 (53%), Gaps = 34/497 (6%) Query: 124 MLSQSMSFYQNEFAGRVATKVMQSALAVRDFCMIVGDILVFITIYFATLVGVVGSFDMWM 183 +++QS F++ +G V +++ ++ + + T+ FA + ++ + + Sbjct: 99 VVTQSPQFFETTQSGEVLSRLTTDTTLIQTLIGTSISMALRNTLLFAGGLVMLFVTSIKL 158 Query: 184 LAPFFIWLAAFAVAMRYFVPRLSAVARNQADA---RSLMTGRITDAYTNIATVKLFSHTG 240 + + L A + + +F R+ +++R D S + G I +A + TV+ F+H Sbjct: 159 SSIILVMLIATVLPIVWFGRRVRSLSRASQDRVADSSALAGEILNA---MPTVQAFTHEK 215 Query: 241 READYARSAMREFLTTVNRQMRLVSGFEVVNHMLNMVLIIGATGVSLYLWTQGKVGVGAV 300 E++ + + T R++R S + M+ ++LI GA + LW +G AV Sbjct: 216 IESERFSKTVEDAFKTAMRRIRARS----LLTMIAILLIFGA--IVFVLW----LGAHAV 265 Query: 301 AASTAMALRLNGIAHW---VMWEMSSLFEHVGTVQDG-------INTLARAHDVKDAPDA 350 T L + V + +L E VG Q + LA + Sbjct: 266 IDGTMSGGELGQFILYSAIVAGAIGALSEVVGDAQRAAGATERLLELLAVQSPISSPAVP 325 Query: 351 KPLQVRQGE---LRFEGVSFSYGGAAPRPVVDQLDLVIRPGEKIGLVGRSGAGKSTIVNL 407 PL R+ L + VSF Y P + + I+ GE + +VG SGAGK+++ L Sbjct: 326 LPLPPRRANGSSLALDLVSFYYPSRPLTPAISNFSIAIKAGETVAVVGPSGAGKTSLFQL 385 Query: 408 LLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENVIYGRPEASDAE 467 LLRFYD + G I +DG DI + +LR IG+V QDT + + EN+ YGRP+ASD E Sbjct: 386 LLRFYDPQEGVIELDGVDIRQLDLHALRNTIGIVPQDTVIFSANAMENIRYGRPDASDEE 445 Query: 468 MIHAAQRAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLL 527 +I A+ A AH+FI L + GY + +GERGV+LSGGQRQRIAIAR +LK+ P+LLL Sbjct: 446 VIAVAKMAAAHEFIDRLPE-----GYQSFLGERGVRLSGGQRQRIAIARALLKNPPLLLL 500 Query: 528 DEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGTHAE 587 DEATSALD+E E +Q++L M G+T + IAHRL+T+ R+IV++ G IVE GTHA Sbjct: 501 DEATSALDAESERLVQSALEAAMVGRTTLVIAHRLATVQRAHRIIVMEHGHIVETGTHAS 560 Query: 588 LLAANGLYARLWSHQSG 604 L+AA GLYA L + Q G Sbjct: 561 LVAAGGLYASLAALQFG 577 >gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/ATP-binding protein [Herminiimonas arsenicoxydans] Length = 581 Score = 213 bits (541), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 172/521 (33%), Positives = 245/521 (47%), Gaps = 54/521 (10%) Query: 116 LRWNFHRLMLSQSMSFYQNEFAGRVATKVMQSALAVRDFCMIVGDILVFITIYFATLVGV 175 LR +L + FY GRV +M V I+ IT + +++ Sbjct: 94 LRKKMFERILDVPLGFYGTHSVGRVINSMMFE----------VQQIIEMITKVYTSIIR- 142 Query: 176 VGSFDMWMLAPFFIWL------------AAFAVAMRYFVPRLSAVARNQADARSLMTGRI 223 S + +L F WL A+ +R+ R+ + R + MT I Sbjct: 143 -DSLTVIVLLAFLFWLNWRLTLVALVLLPLIAIVVRFTGKRVRRLTREYQAVNAEMTQVI 201 Query: 224 TDAYTNIATVKLFSHTGREADYARSAMREFLTTVNRQMRLVSGFEVVNHMLNMVLIIGAT 283 ++ +K+F E D + + R ++ V ++ + Sbjct: 202 EESTRANQVIKIFGGHQYENDRFEVRADKLRSYTMRMASTLAATTPVTQIMASCAVAIVI 261 Query: 284 GVSLYLWTQGKVGVGA-VAASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINTLARAH 342 ++L Q + VG V+ TAM + ++ + ++ E G +Q G L A Sbjct: 262 VIALIQSEQNQTTVGGFVSFITAMLM--------LLAPLKNIAEVNGPLQKG---LTAAE 310 Query: 343 DVKDAPDAKP-------LQVRQ-GELRFEGVSFSYGGAAPRPVVDQLDLVIRPGEKIGLV 394 V DAKP L+ R G+L F + FSY G + D ++L + PGE I V Sbjct: 311 AVFGLIDAKPERTSGKTLEARAAGKLDFINLGFSYPGHQSMALED-INLSVLPGETIAFV 369 Query: 395 GRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRE 454 G SG GKST+VNL+ FY G I +D I + SLR QI MV+Q L ++ Sbjct: 370 GMSGGGKSTLVNLVPGFYPATVGEIRLDDVPIEEIALTSLRRQIAMVSQHVVLFDDTIAA 429 Query: 455 NVIYGRPEASDAEMIHAAQRAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAI 514 N+ YG A ++ AA A D I L G + +G+ G +LSGGQRQR+AI Sbjct: 430 NIAYGDETPDRARILAAATAAHLDDVIAGLPQ-----GLETMIGDNGSRLSGGQRQRLAI 484 Query: 515 ARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVL 574 AR + KDAPIL+LDEATSALDSE E A+Q +L LM+G+T + IAHRLSTI DR+ VL Sbjct: 485 ARAIYKDAPILILDEATSALDSESERAVQAALDALMKGRTTLVIAHRLSTIERADRIAVL 544 Query: 575 DQGRIVEQGTHAELLAANGLYARLWSHQSGGFLGEEEEDEV 615 +GRIVE G+H ELL N +YA L+ Q +EE D V Sbjct: 545 AEGRIVELGSHQELLEKNAVYANLYHLQ----FAKEEPDAV 581 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.325 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,145,860 Number of extensions: 47845 Number of successful extensions: 391 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 321 Number of HSP's successfully gapped: 48 Length of query: 621 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 534 Effective length of database: 713,682 Effective search space: 381106188 Effective search space used: 381106188 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)