BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4663.p (564 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 360 e-100 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 347 8e-97 gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 341 6e-95 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 338 5e-94 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 328 4e-91 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 360 bits (923), Expect = e-100, Method: Compositional matrix adjust. Identities = 240/526 (45%), Positives = 343/526 (65%), Gaps = 23/526 (4%) Query: 9 RSLSVAARLALSFALVLAMLLVLTVVSISKVNAIEGSLKRVSEDNSVKQRYAINFRGSVH 68 ++L + RL ++F L+L ++ +TV+ + ++ + + E+ ++K+R A + + Sbjct: 4 KNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDV-AKATVLMEEATIKERLAQQWIKGIE 62 Query: 69 DRAIALRDLTLVSDPEVKDVVALIDKLDADYQQSAKPLDHIFATMQVNAEERASLERIKA 128 + SDPE + L ++ A +K D + T+ V+AE + L + Sbjct: 63 TNTVRTFARVRTSDPEQDKI--LQQEMSAISAAVSKQQDEL-ETLVVSAEGKKLLATVAE 119 Query: 129 IEARTMPLAAKTIAARQA--GDLDGARQLLLTQVKPAFVEWLAAINHLIDLEEHMSQAES 186 A + + R+A +L A + ++KPA ++ ++ +++ ++ E Sbjct: 120 KRATYTAIRDDVMNLREARGAELQNA---IANKMKPAADAYIQSVEAVVN--AQINNFED 174 Query: 187 AKARGNAHGFQA--FMLVLLG-VALVAGVVLATLITRAIRGALGAEPDEVKEVALAVDRG 243 AK R + +Q+ +L++LG VAL G+VLA ++TR+I L D VA V G Sbjct: 175 AKGRVDTI-YQSARMLLIVLGLVALTLGIVLAWMLTRSITKPL----DYAVSVARLVASG 229 Query: 244 ELYHAVALPAGG-AGQRQSIMAVLSEMSGNLRGTVTRVRDAAAGVATISAQIAAGNSDLS 302 +L + + + GQ ++ L +M+ +L ++T+VR +AT S QIA+GN DLS Sbjct: 230 DLTGRITVDSKDETGQ---LLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLS 286 Query: 303 ARTEDQASSLQETASAMEQLTATVKQNDGHARQANQLAHNASEIARQGGAIVDQVVDTMS 362 +RTE+QASSL+ETAS+ME+LT+TVKQN +ARQANQLA AS +A +GG +V +VVDTM Sbjct: 287 SRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMD 346 Query: 363 AINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAA 422 INTS+RKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAA Sbjct: 347 GINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAA 406 Query: 423 AAKEIKQLIDASVGNVDSGTRLVEQAGQTMEQIVASVQQVTDVMGEISAASHEQSLGIEE 482 AAKEIK LID SV VD+G++LV +AG TM ++V SV++VTD+M EI AAS EQS GIE+ Sbjct: 407 AAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQ 466 Query: 483 VNKAIALMDQVTQHNAALVEQASAAVATLQEQAVSLNQAVGVFQLE 528 VN+AI MDQVTQ NAALVE+A+AA +L EQA +L QAV +F+L+ Sbjct: 467 VNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLD 512 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 347 bits (891), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 236/529 (44%), Positives = 333/529 (62%), Gaps = 19/529 (3%) Query: 9 RSLSVAARLALSFALVLAMLLVLTVVSISKVNAIEGSLKRVSEDNSVKQRYAINFRGSVH 68 +++S+ RL L+ + ML+V + I V +L+ + N + AI+ S+ Sbjct: 3 KNISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYV-NQMPSSEAIH---SMM 58 Query: 69 DRAIALR-DLTLVS-DPEVKDVVALIDKLDADYQQSAKPLDHIFATMQVNAEERASLERI 126 R + R L LV+ P + ++ + + Y QS + + EER + + Sbjct: 59 TRLLQARAGLNLVAMRPHEEGSERILKRAENFYLQSEEEWKKYLSLPIETLEERKVADEV 118 Query: 127 KAIEARTMPLAAK-TIAARQAGDLDGARQLLLTQVKPAFVEWLAAINHLIDLEEHMSQAE 185 A R + A + IAA +AG + +L+ ++ P F + + L++L+ + Sbjct: 119 TAKRIRYLKEAEQGLIAALRAGRNEEVEDILVNKMPPLFQSLTKSTDELVELQMKSAATG 178 Query: 186 SAKARGNAHGFQAFMLVLLGVALVAGVVLATLITRAIRGALGAEPDEVKEVALAVD---R 242 ++ H F+ +V + + L+ + A + RAI G L KE+ L D Sbjct: 179 YQDSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPL-------KEMLLHFDTIAS 231 Query: 243 GELYHAVALPAGGAGQRQSIMAVLSEMSGNLRGTVTRVRDAAAGVATISAQIAAGNSDLS 302 G+L + + + + ++M L +M L TV +VR+ + ++T + +IAAGN DLS Sbjct: 232 GDLTSNIEVKS--RNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLS 289 Query: 303 ARTEDQASSLQETASAMEQLTATVKQNDGHARQANQLAHNASEIARQGGAIVDQVVDTMS 362 +RTE QA+SL+ETAS+ME+LT+TVKQN +ARQANQLA +AS +A +GGA+V VV+TM Sbjct: 290 SRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMD 349 Query: 363 AINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAA 422 AINTS+RKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAA Sbjct: 350 AINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAA 409 Query: 423 AAKEIKQLIDASVGNVDSGTRLVEQAGQTMEQIVASVQQVTDVMGEISAASHEQSLGIEE 482 AAKEIK LID SV VD+GTRLV +AG TM ++V SV++VTD+M EI AAS EQS GIE+ Sbjct: 410 AAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQ 469 Query: 483 VNKAIALMDQVTQHNAALVEQASAAVATLQEQAVSLNQAVGVFQLEAPQ 531 VN AI MD+VTQ NAALVEQA+AA ++L++QA +L+ V VF+L+ Q Sbjct: 470 VNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQGHQ 518 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 341 bits (874), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 195/335 (58%), Positives = 259/335 (77%), Gaps = 3/335 (0%) Query: 197 QAFMLVLLGVALVAGVVLATLITRAIRGALGAEPDEVKEVALAVDRGELYHAVALPAGGA 256 +AFM++L+ ++ +G++L LITR ++G LG EP+ VA + G+L A+ L + Sbjct: 191 RAFMVLLVILSAFSGILLGVLITRNLKGQLGGEPNYAAGVAARIAAGDLTVAIDLRSK-- 248 Query: 257 GQRQSIMAVLSEMSGNLRGTVTRVRDAAAGVATISAQIAAGNSDLSARTEDQASSLQETA 316 + S++ + EM +L V++VR + T S QIAAGN DLS+RTE+QAS+L+ETA Sbjct: 249 -DQTSMLFAMREMRDSLASIVSQVRSGTDTITTASGQIAAGNLDLSSRTEEQASALEETA 307 Query: 317 SAMEQLTATVKQNDGHARQANQLAHNASEIARQGGAIVDQVVDTMSAINTSSRKIVDIIG 376 S+ME++T+TVKQN +++QA+ LA +AS A +GGA+V QVVDTM +I SSRKIVDIIG Sbjct: 308 SSMEEITSTVKQNAENSQQASTLAVHASSTAIRGGAVVSQVVDTMGSITESSRKIVDIIG 367 Query: 377 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKQLIDASVG 436 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIKQLI SV Sbjct: 368 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIGDSVE 427 Query: 437 NVDSGTRLVEQAGQTMEQIVASVQQVTDVMGEISAASHEQSLGIEEVNKAIALMDQVTQH 496 VD+G++LVEQAG TM++IV +Q+V D+M +I+AA EQS GIE+VN+AIA MD+VTQ Sbjct: 428 KVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDITAAGREQSAGIEQVNQAIAQMDEVTQQ 487 Query: 497 NAALVEQASAAVATLQEQAVSLNQAVGVFQLEAPQ 531 NAALVE+A+AA +LQ+QA L++ V VF+L+ Q Sbjct: 488 NAALVEEAAAASQSLQDQATHLSEIVSVFKLDNTQ 522 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 338 bits (866), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 199/329 (60%), Positives = 244/329 (74%), Gaps = 3/329 (0%) Query: 203 LLGVALVAGVVLATLITRAIRGALGAEPDEVKEVALAVDRGELYHAVALPAGGAGQRQSI 262 +LG VA +L L+ R++ LG EP ++ + G+L + G R S+ Sbjct: 192 VLGAGAVAATLLGFLLVRSVYAQLGGEPQYAAQIVRRIAGGDLSATIITRKG---DRNSL 248 Query: 263 MAVLSEMSGNLRGTVTRVRDAAAGVATISAQIAAGNSDLSARTEDQASSLQETASAMEQL 322 +A + +M NL TV +R A+ +AT S QIAAGN DLSARTE QASSL+ETAS+ME+L Sbjct: 249 LAAMQDMQQNLAKTVGDIRRASDTIATASGQIAAGNIDLSARTEQQASSLEETASSMEEL 308 Query: 323 TATVKQNDGHARQANQLAHNASEIARQGGAIVDQVVDTMSAINTSSRKIVDIIGVIDGIA 382 TATVKQN GHA+QANQLA +AS+IA QG +V QVV TM +I+ S+ +I DIIGVI+GIA Sbjct: 309 TATVKQNAGHAQQANQLAVSASDIAVQGNTVVAQVVTTMDSISASAGRIGDIIGVINGIA 368 Query: 383 FQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKQLIDASVGNVDSGT 442 FQTNILALNAAVEAAR GEQGRGFAVVATEVR+LAQRSA AAKEIK LID S+ V +G Sbjct: 369 FQTNILALNAAVEAARVGEQGRGFAVVATEVRSLAQRSAEAAKEIKSLIDDSLEKVGAGA 428 Query: 443 RLVEQAGQTMEQIVASVQQVTDVMGEISAASHEQSLGIEEVNKAIALMDQVTQHNAALVE 502 LV+QAG TM +IVAS+ QVTD+MGEI+ AS EQ+ GIE+VN+AI MD+VTQ NAALVE Sbjct: 429 TLVDQAGSTMNEIVASIGQVTDIMGEITTASREQTAGIEQVNQAIGQMDRVTQQNAALVE 488 Query: 503 QASAAVATLQEQAVSLNQAVGVFQLEAPQ 531 +A+AA +LQEQA SL Q V VF+LE Q Sbjct: 489 EAAAAAGSLQEQACSLVQVVSVFKLEQAQ 517 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 328 bits (841), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 236/526 (44%), Positives = 336/526 (63%), Gaps = 39/526 (7%) Query: 36 ISKVNAIEGSLKRVSEDNSVKQRYAINF--RGSVHDRAIALRDLTLV--SDPEVKDVVAL 91 I ++ I G+ + + +D+ Q+ A N+ SV+ A R L LV SDPE ++ Sbjct: 31 IMRLENINGASRHLVDDSLSMQKSAQNWLLGTSVN----ASRTLALVKASDPESQEF--- 83 Query: 92 IDKLDADYQQSAKPLDHIFATMQVNAEERASLERIKAIEARTMPLAAKTIAARQA----- 146 +Q++ +Q + E+R + ++ K + A + I R++ Sbjct: 84 -------FQKAITAQSKQITEIQKSIEDRINSDKEKELFAEVAKKRSAYIDIRKSILGVK 136 Query: 147 --GDLDGARQLLLTQVKPAFVEWLAAINHLIDLEEHMSQAESAKARGNAHGFQAFMLVLL 204 G++ A Q++ T++ PA ++ ++ ++ L + ++ + A M +++ Sbjct: 137 AGGNIAEANQMIDTKMVPALDAYVDSVKNV--LGHYENEVKLADESITDDYLSGRMALII 194 Query: 205 G--VALVAGVVLATLITRAIRGALGAEPDEVKEVALAVDRGELYHAVALPAGGAGQRQSI 262 G +A++ G ++A +T I L E +VA +V G+L A + A + + Sbjct: 195 GAVIAILLGTLIAWRLTVGITRPL----HEALKVAESVAEGDLT-ARSDMAETQDEPGLL 249 Query: 263 MAVLSEMSGNLRGTVTRVRDAAAGVATISAQIAAGNSDLSARTEDQASSLQETASAMEQL 322 ++ L M NL TVT++R +AT S++IA+GN DLS+RTE QASSL+ETAS+ME+L Sbjct: 250 LSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEETASSMEEL 309 Query: 323 TATVKQNDGHARQANQLAHNASEIARQGGAIVDQVVDTMSAINTSSRKIVDIIGVIDGIA 382 T+TVKQN ++RQANQLA AS +A +GGA+V QVVDTM AIN S++KIVDIIGVIDGIA Sbjct: 310 TSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDIIGVIDGIA 369 Query: 383 FQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKQLIDASVGNVDSGT 442 FQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIK LI SV VD+G+ Sbjct: 370 FQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSVEKVDAGS 429 Query: 443 RLVEQAGQTMEQIVASVQQVTDVMGEISAASHEQSLGIEEVNKAIALMDQVTQHNAALVE 502 +LV +AG TM++IV V++V D+M EI+AAS EQS GIE+VN+A++ MDQVTQ NAALVE Sbjct: 430 KLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQQNAALVE 489 Query: 503 QASAAVATLQEQAVSLNQAVGVFQLEAPQEGAVVVTSTAPVLQTVQ 548 +A+AA +LQ+QA +L +AV VF++ + G S AP +TVQ Sbjct: 490 EAAAAAESLQDQARNLAEAVSVFRVGS---GYATAQSAAP--RTVQ 530 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.126 0.327 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 740,631 Number of extensions: 24428 Number of successful extensions: 184 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 15 Length of query: 564 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 477 Effective length of database: 713,682 Effective search space: 340426314 Effective search space used: 340426314 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)