BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4662.p (604 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093501|ref|YP_001098576.1| putative ABC transporter ATP-bi... 681 0.0 gi|134096472|ref|YP_001101547.1| putative ABC transporter [Hermi... 73 4e-14 gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding pro... 72 8e-14 gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/... 66 4e-12 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 62 6e-11 >gi|134093501|ref|YP_001098576.1| putative ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 593 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/559 (60%), Positives = 420/559 (75%), Gaps = 3/559 (0%) Query: 34 IWRLVKPFWVSEEKWKAWALLVSIIALNLGMVYINVRLNSWNRDMYNVLQSRDYPQFKSL 93 +WRL++P+WVSEEKW+A LL++I+AL LGMVY+ V N+WNR+ YN L++++Y F Sbjct: 11 VWRLIQPYWVSEEKWRARGLLLTIVALALGMVYLEVLFNTWNREFYNALETKNYKVFTEQ 70 Query: 94 LWQFSGLAFVFVAIAIYSVYLKQALQIRWRYWMSTRYLDRWLAHRAYYRIEQGQQGRLSD 153 LW+FS LAF+F+A+AIY +YL Q+LQ+RWR W++ +Y+ RWL H+AYYRIEQ +D Sbjct: 71 LWRFSYLAFIFIAVAIYRIYLTQSLQMRWRMWLTKQYMARWLTHQAYYRIEQTHT---AD 127 Query: 154 NPDQRIAEDLHALTSDTLALVLGFISSSVTLFSFIHILWSVSGPLTFSALGQSWVIPGYM 213 NPDQRIAEDL+ LTS +L+L LG +SS VTL SFI ILWSVSGP++F Q +PGYM Sbjct: 128 NPDQRIAEDLNFLTSGSLSLSLGLLSSVVTLVSFIGILWSVSGPISFMLGTQEMTVPGYM 187 Query: 214 VWFVIAYATIGSSVVWWIGRPLVGLSFDQERFEANFRFGLIRVREHAEAVALYRGEPQER 273 VWF IAYA IGS VV W+G PL+G +F Q+RFEA+FRFGLIRVRE+AEAVALYRGE +E Sbjct: 188 VWFAIAYAGIGSLVVGWVGWPLIGKNFYQQRFEADFRFGLIRVRENAEAVALYRGEAEES 247 Query: 274 AQLTARLDDIRENWWNIMRLTKKLNVAVNFYGQFAVIFPMLVSAPRYFSGAISLGVLMQI 333 QL R IR+NWW IMR TK LN+ FY QFA IFP L++APRYFSGAI+LG LMQI Sbjct: 248 VQLQGRFQRIRDNWWGIMRTTKSLNLVSTFYSQFANIFPFLMAAPRYFSGAITLGGLMQI 307 Query: 334 SDAFGQVQDALSWFINAFSTLASWKASINRLAGFHADVERASGMTRSIEVAPYSGSAVTV 393 S AFGQVQ ALSWFI+AFS LA+WKAS+NRLAGFHA VE A + V + A+ + Sbjct: 308 SSAFGQVQGALSWFISAFSDLAAWKASVNRLAGFHAAVETAHADAGGVTVTVNNVGAILI 367 Query: 394 AGLQLSFPDGRPMMSRLDARVESGEHVLISGPSGCGKSTLIRAMADIWPYGEGRIALPQD 453 L+L PDG+P+ S L A ++ G+ +LI+GPSGCGKSTLIRA+A IW YG G I +P Sbjct: 368 ENLKLDLPDGQPLTSSLSADIQRGQRILIAGPSGCGKSTLIRAIAGIWLYGNGGIEIPHQ 427 Query: 454 APAMFLPQRSYLPIGTLRAALSYPAAEGSFDDALITRYLGLCRLSHLAAQLDVAANWSQA 513 +FLPQ+SYLPI TLRAA++YPA+E S+ D I Y LCRL HL QLD NWSQ Sbjct: 428 WKLLFLPQKSYLPITTLRAAVAYPASESSYTDLAIQYYFDLCRLPHLKQQLDQVDNWSQR 487 Query: 514 LSPGEQQRLAFVRVFLNRPRIVFLDEASSAMDGETEETLYAALPRELPGLTVISIAHRET 573 LSPGEQQR+AFVR L RP +F+DEASSA+D ETEE +Y + +ELP +IS+AHRE+ Sbjct: 488 LSPGEQQRVAFVRALLTRPDALFMDEASSALDTETEELMYQLILQELPEAAMISVAHRES 547 Query: 574 LARFHDVRWKFVPSATEEG 592 +A HD+RW+FV T G Sbjct: 548 VASHHDIRWQFVAGETAAG 566 >gi|134096472|ref|YP_001101547.1| putative ABC transporter [Herminiimonas arsenicoxydans] Length = 726 Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 18/193 (9%) Query: 403 GRPMMSRLDARVESGEHVLISGPSGCGKSTLIRAMADIWPYGEGRIALPQ-DAPAMFLP- 460 R ++ LD ++ GE + + G SG GKSTL+ + + +G I + D ++ +P Sbjct: 485 NRAVIRGLDLDIQPGEMIGLVGHSGSGKSTLVNLICRFYDVSDGAILVDGIDVRSIPIPE 544 Query: 461 ---------QRSYLPIGTLRAALSYPAAEGSFDDALITRYLG-----LCRLSHLAAQLDV 506 Q +L GT+ ++Y + S ++ + + RL H + Sbjct: 545 YRRNIGLVLQEPFLFFGTIADNIAYGKPDASREEIIAAARAANAHEFILRLPH--GYDSM 602 Query: 507 AANWSQALSPGEQQRLAFVRVFLNRPRIVFLDEASSAMDGETEETLYAALPRELPGLTVI 566 Q LS GE+QR++ R L P I+ LDEA+S++D TE + AL + G T I Sbjct: 603 VGERGQTLSGGERQRISIARALLIDPHILILDEATSSVDTTTEREIQKALDNLVRGRTTI 662 Query: 567 SIAHRETLARFHD 579 +IAHR + R D Sbjct: 663 AIAHRLSTLRRAD 675 >gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 648 Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 68/265 (25%), Positives = 112/265 (42%), Gaps = 15/265 (5%) Query: 321 FSGAISLGVLMQISDAFGQVQDALSWFINAFSTLASWKASINRLAGFHADVERASGMTRS 380 SG ++LG L+ ++ Q+ L++ + + A + RL D R + Sbjct: 311 ISGTMTLGDLVLVNAFMIQLYIPLNFLGVIYREIKQSLADMERLFSL-LDQHREIADKPN 369 Query: 381 IEVAPYSGSAVTVAGLQLSFPDGRPMMSRLDARVESGEHVLISGPSGCGKSTLIRAMADI 440 + G+ V + + S+ R ++ +D + +G + G SG GKSTL R + Sbjct: 370 TQALVVQGAEVKFSHVGFSYEAKRQILFDVDFTIAAGTTTAVVGHSGSGKSTLSRLLFRF 429 Query: 441 WPYGEGRIALP-QDAPAM----------FLPQRSYLPIGTLRAALSYPAAEGSFDD---A 486 + EG I + QD + +PQ + L T+ ++Y S DD A Sbjct: 430 YDVNEGAILIDGQDVRDVTQASLRNAIGIVPQDTVLFNDTIEYNIAYGKPGASKDDIVAA 489 Query: 487 LITRYLGLCRLSHLAAQLDVAANWSQALSPGEQQRLAFVRVFLNRPRIVFLDEASSAMDG 546 + Y+ S + LS GE+QR+A R L P I+ DEA+SA+D Sbjct: 490 AKSAYIHDFIESLPDGYATMVGERGLKLSGGEKQRVAIARTLLKHPAILIFDEATSALDS 549 Query: 547 ETEETLYAALPRELPGLTVISIAHR 571 + E+ + A L T + IAHR Sbjct: 550 KAEQAIQAQLKEIAKDRTTMVIAHR 574 >gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/ATP-binding protein [Herminiimonas arsenicoxydans] Length = 581 Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 97/218 (44%), Gaps = 25/218 (11%) Query: 372 ERASGMTRSIEVAPYSGSAVTVAGLQLSFPDGRPM-MSRLDARVESGEHVLISGPSGCGK 430 ER SG T A + L S+P + M + ++ V GE + G SG GK Sbjct: 321 ERTSGKTLEARAA----GKLDFINLGFSYPGHQSMALEDINLSVLPGETIAFVGMSGGGK 376 Query: 431 STLIRAMADIWPYGEGRIAL---PQDAPAM--------FLPQRSYLPIGTLRAALSYPAA 479 STL+ + +P G I L P + A+ + Q L T+ A ++Y Sbjct: 377 STLVNLVPGFYPATVGEIRLDDVPIEEIALTSLRRQIAMVSQHVVLFDDTIAANIAY--G 434 Query: 480 EGSFDDALITRYLGLCRLSHLAAQLD------VAANWSQALSPGEQQRLAFVRVFLNRPR 533 + + D A I L + A L + N S+ LS G++QRLA R Sbjct: 435 DETPDRARILAAATAAHLDDVIAGLPQGLETMIGDNGSR-LSGGQRQRLAIARAIYKDAP 493 Query: 534 IVFLDEASSAMDGETEETLYAALPRELPGLTVISIAHR 571 I+ LDEA+SA+D E+E + AAL + G T + IAHR Sbjct: 494 ILILDEATSALDSESERAVQAALDALMKGRTTLVIAHR 531 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 26/186 (13%) Query: 414 VESGEHVLISGPSGCGKSTLIRAMADIWPYGEGRIALPQ-DAPAMFLPQR---------S 463 +E+GE + GPSGCGK+TL+R +A G+I L D + QR + Sbjct: 26 IEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLDGVDLTGVPPEQRVVRTVFQNYA 85 Query: 464 YLPIGTLRAALSYPAAEGSFDDALITRY----LGLCRLSHLAAQLDVAANWSQALSPGEQ 519 P T+ +++P + + I + L RL+ AA+ + LS G++ Sbjct: 86 LFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALEDVRLTGFAAR------YPHELSGGQR 139 Query: 520 QRLAFVRVFLNRPRIVFLDEASSAMDGETEETLYAA---LPRELPGLTVISIAHR--ETL 574 QR++ R + RP+++ LDE SA+D + E + L +E+ G+T + + H E L Sbjct: 140 QRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEV-GITFVYVTHDQAEAL 198 Query: 575 ARFHDV 580 A H + Sbjct: 199 ALSHRI 204 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.136 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,171,097 Number of extensions: 49728 Number of successful extensions: 278 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 277 Number of HSP's successfully gapped: 7 Length of query: 604 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 517 Effective length of database: 713,682 Effective search space: 368973594 Effective search space used: 368973594 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)