BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4661.p
         (282 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096156|ref|YP_001101231.1| D-alanine aminotransferase [Her...   366   e-103
gi|134095779|ref|YP_001100854.1| branched-chain amino acid amino...    93   1e-20

>gi|134096156|ref|YP_001101231.1| D-alanine aminotransferase
           [Herminiimonas arsenicoxydans]
          Length = 271

 Score =  366 bits (940), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/269 (64%), Positives = 217/269 (80%), Gaps = 1/269 (0%)

Query: 12  FTPLSEARVPVLDRGFIFGDGIYEVIPMYRRKAFRGQQHLARLFRSLASIGIPNPHDQAG 71
            TPLSEA++PVLDRGFIFGDGIYEVIP+Y+RK FR  QHL RLFR LA++ I NP+D  G
Sbjct: 1   MTPLSEAKIPVLDRGFIFGDGIYEVIPVYQRKLFRSAQHLQRLFRGLAAVSIVNPYDAQG 60

Query: 72  WNALIDQVVQANGLEDQMIYLQVTRGVAKRAHAFP-KEVVPTVLIMTNPMALPPASAIEQ 130
           W ALI++VV+ +  EDQ++Y+QVTRGVA R HAFP  +  PTV IM+NP+      A   
Sbjct: 61  WLALIEEVVRRHPAEDQLVYMQVTRGVAPRMHAFPPTKPAPTVFIMSNPLLPLSDEARAN 120

Query: 131 GVACVTMEDRRWLNCQIKSTSLLGNVLAAQFAAENQVTEAIQFRDGFLSEASSSNVWVVK 190
           GVACV+MED+RWL+C+IKS SLLGNVLAAQ A  ++ +E+IQFRDGFL+E S+SNVW+VK
Sbjct: 121 GVACVSMEDQRWLHCEIKSISLLGNVLAAQNAVVHEASESIQFRDGFLTEGSASNVWIVK 180

Query: 191 DGKISAPPKDNLILEGIRYGLMEELCAEQGIVLESRRIPREEVLAADELIISSASKEVLP 250
           +G +  PP+DNLILEGIRYGL+EELCA   I  E+RRI R EV AADE+++SSASKEVL 
Sbjct: 181 NGGVIGPPRDNLILEGIRYGLIEELCAAGRIPFETRRIARAEVFAADEVLLSSASKEVLA 240

Query: 251 VVKLDGQPVGSGQPGPVFGKVYAAYQAAK 279
           V  +DGQP+ +G+PGP++ K+YAAYQAAK
Sbjct: 241 VATIDGQPIANGKPGPIYKKLYAAYQAAK 269


>gi|134095779|ref|YP_001100854.1| branched-chain amino acid
           aminotransferase [Herminiimonas arsenicoxydans]
          Length = 306

 Score = 93.2 bits (230), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 126/283 (44%), Gaps = 11/283 (3%)

Query: 3   DPIVYLNGEFTPLSEARVPVLDRGFIFGDGIYEVIPMYRR----KAFRGQQHLARLFRSL 58
           D  ++ +G      +A V VL     +G  ++E +  YR       FR ++H  RLF S 
Sbjct: 7   DGKIWKDGRLIDWRDATVHVLTHSLHYGMAVFEGVRAYRTPQGTAIFRLREHTERLFNSA 66

Query: 59  ASIGIPNPHDQAGWNALIDQVVQANGLEDQMIYLQVTRGVAKRAHAFPKEVVPTVLIMTN 118
               +  P DQ        QVV+ N LE   +   V  G  K   +     +   +    
Sbjct: 67  KIFQMTIPFDQETVMQAQLQVVRENRLESCYLRPLVWIGDEKLGVSAQGNTIHIAIAAWP 126

Query: 119 PMALPPASAIEQGVACVTME-DRRWLNCQI----KSTSLLGNVLAAQFAAENQVTEAIQF 173
             A      I +G+   T    R  +N  +     S   + ++LA Q A  +   EA+  
Sbjct: 127 WGAYLGEDGINKGIRVKTSSFSRHHVNVSLVRAKASGYYINSILANQEALADGYDEALLL 186

Query: 174 -RDGFLSEASSSNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGIVLESRRIPREE 232
             DG++SE S  NV++VK GKI  P   +  L+GI    +  +  + GI +  +RI R+E
Sbjct: 187 DTDGYVSEGSGENVFIVKKGKIYTPDLASC-LDGITRDSVLTMARDLGIDVVEKRITRDE 245

Query: 233 VLAADELIISSASKEVLPVVKLDGQPVGSGQPGPVFGKVYAAY 275
           V  ADE   +  + E+ P+ +LD + +G G+ GP+  K+ A +
Sbjct: 246 VYCADEAFFTGTAAEITPIRELDNRTIGDGRRGPITEKLQALF 288


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 486,460
Number of extensions: 18469
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 282
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 201
Effective length of database: 733,452
Effective search space: 147423852
Effective search space used: 147423852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)