BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4659.p (316 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093563|ref|YP_001098638.1| LysR family transcriptional reg... 202 1e-53 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 89 3e-19 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 88 6e-19 gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herm... 80 1e-16 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 78 5e-16 >gi|134093563|ref|YP_001098638.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 299 Score = 202 bits (515), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 120/297 (40%), Positives = 172/297 (57%), Gaps = 8/297 (2%) Query: 6 KLPNLASLRAFDAAARHGCFSRAAEEVHVTPGAISHQVRALEEDLGLQLFKRHGKRITIT 65 +LP + +L AF+AAARHG F+ AAEE+ +TP A SH++R LE+ +G +LF R G+ +++T Sbjct: 4 RLPPVHALSAFEAAARHGSFAVAAEELCITPSAFSHRIRLLEDFVGERLFLRDGRSVSLT 63 Query: 66 ETGERFATTIRKALGEIAQAADHLRSLNRQQRLVISATPSFASRWLAPRLWKFIDAHPEI 125 E G R+ +R AL +A R + Q ++ ++ P+FA P L +F+ HPEI Sbjct: 64 EFGRRYLDVVRGALSSLADFPLPHRYASTQLKVKVTVPPTFARYLFLPHLHEFMALHPEI 123 Query: 126 EVVLQSGSHLVDLRLDGVDIGIRFGRGQYSGVVTEKLSEDYYYPVAAPGYRGSRSRKLTR 185 + L D+ L DI +RFG G+Y +VTEKL + +PVA+P Y + KL Sbjct: 124 SIETYLSVPLYDMSLSETDIEVRFGAGKYPDIVTEKLFREPVFPVASPAYL-EQIGKLNV 182 Query: 186 PADLAHCTLLRMDTRESWRPWLQLAGLDLPEPRGTLVVEDSSVTLRHAVEGKGVALSRHT 245 PADL LLR E W+PW ++AGLD EP L ++D + L G GVAL+R Sbjct: 183 PADLQKAQLLR-SALEPWQPWFEMAGLDWQEPSTGLRIDDLGLLLEAVKHGYGVALTRQH 241 Query: 246 IAWQEIASGTLVRLFDVAQLC--EEAHYLVHLPEGLEKPGVAAFKAWITQEMQQFHT 300 A IASG +V LFD+ QL + A+YLV+ E+P VA W+ M++F T Sbjct: 242 FAADMIASGEIVSLFDL-QLTTPQHAYYLVYDRHVRERPEVALMLDWM---MERFST 294 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 88.6 bits (218), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 117/260 (45%), Gaps = 6/260 (2%) Query: 7 LPNLASLRAFDAAARHGCFSRAAEEVHVTPGAISHQVRALEEDLGLQLFKRHGKRITITE 66 + L + AF A H F+ AA + VTP + ++ ALE+ LG++L R +R+ +TE Sbjct: 1 MDKLKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTE 60 Query: 67 TGERFATTIRKALGEIAQAADHLRSLNRQ--QRLVISATPSFASRWLAPRLWKFIDAHPE 124 G + RK L E+ QA L + + + L+ISA SF + +AP F++ HP Sbjct: 61 EGSVYLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPG 120 Query: 125 IEVVLQSGSHLVDLRLDGVDIGIRFGRGQYSGVVTEKLSEDYYYPVAAPGYRGSRSRKLT 184 +++ +VDL +G D+GIR G V KL+ + P Y + T Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGTIDPNFVAIKLAANKRVVCGTPDYFKKHGKPKT 180 Query: 185 RPADLA--HCTLLRMDTRESWRPWLQLAGLDLP-EPRGTLVVEDSSVTLRHAVEGKGVAL 241 DLA +C + + + G + +G+L D + R EG G+A Sbjct: 181 LD-DLAKHNCLAFNLQGGQQRGWYFNHRGKTVSVRAQGSLDCNDGELLHRWMSEGLGIAW 239 Query: 242 SRHTIAWQEIASGTLVRLFD 261 ++ SGTL + D Sbjct: 240 RSVWEIQSQLESGTLETVLD 259 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 87.8 bits (216), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 8/301 (2%) Query: 7 LPNLASLRAFDAAARHGCFSRAAEEVHVTPGAISHQVRALEEDLGLQLFKRHGKRITITE 66 + ++ L F + G + AA+E+ VTP ++S ++ +E L ++L R +RI++T Sbjct: 1 MDGISDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTP 60 Query: 67 TGERFATTIRKALGEIAQAADHLRSLNRQQR--LVISATPSFASRWLAPRLWKFIDAHPE 124 GE + + + E+ + N + L ISAT F R + P+L F +PE Sbjct: 61 EGEIYLADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPE 120 Query: 125 IEVVLQSGSHLVDLRLDGVDIGIRFGRGQYSGVVTEKLSEDYYYPVAAPGYRGSRSRKLT 184 ++V L V+L G D IRFG+ + + K++++ A+P Y + LT Sbjct: 121 VDVQLHLTDRPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPAYLKNHGIPLT 180 Query: 185 RPADLA--HCTLLRMDTRESWRPWLQLAGL--DLPEPRGTLVVEDSSVTLRHAVEGKGVA 240 P DL +C LLR ++ E + W +G + + RG+L D A++G+G+ Sbjct: 181 -PRDLQKHNCILLR-ESDEIYGSWHFSSGTKQETVKVRGSLSANDGECATAWALDGQGIV 238 Query: 241 LSRHTIAWQEIASGTLVRLFDVAQLCEEAHYLVHLPEGLEKPGVAAFKAWITQEMQQFHT 300 + + SG L + + QL + Y+V + A ++ Q + T Sbjct: 239 VRSEWDVAPYLRSGRLRTVLEDWQLPQADIYIVFPTKNHLSAKTRALVDFMLQAFESHRT 298 Query: 301 D 301 D Sbjct: 299 D 299 >gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 304 Score = 80.5 bits (197), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 118/265 (44%), Gaps = 10/265 (3%) Query: 7 LPNLASLRAFDAAARHGCFSRAAEEVHVTPGAISHQVRALEEDLGLQLFKRHGKRITITE 66 L L LR F AAA F AA + +P AI+ V+ LEE +G LF R+ + I ITE Sbjct: 2 LNRLEMLRLFCAAADASSFKEAAARLGTSPQAITRAVKELEEAVGELLFHRNTRGIQITE 61 Query: 67 TGERFATTIRKALGEIAQAADHLRSL---NRQQRLVISATPSFASRWLAPRLWKFIDAHP 123 G + A R+ + + + H L N + + I+A R L L I +P Sbjct: 62 FGTQLAEHAREMVTGVDKLFHHTNPLSDTNLEGLVRITAPSPIGRRHLLKLLLPLIRQYP 121 Query: 124 EIEVVLQSGSHLVDLRLDGVDIGIRFGRGQYSGVVTEKLSEDYYYPVAAPGYRGSRSRKL 183 I++ L + L D+ +DIG+R G + S +V + + ++ VA P +R + + Sbjct: 122 GIKLELGVTNLLADVVDKKIDIGVRIGPLRDSRLVARSVGKVSFFVVATPELVATRGKPI 181 Query: 184 TRPAD---LAHCTLLRMDTRESWRPWLQLAGLDLPEPRGTLVVEDSSVTLRHAVEGKGVA 240 T P D L L+ +T W PW L TLV +D V + G G Sbjct: 182 T-PQDLLGLPTTALMDGNTGRIW-PWYFADSQPLTLTSPTLVSDDPEVECDAVLAGIGYG 239 Query: 241 -LSRHTIAWQEIASGTLVRLFDVAQ 264 LS H A I SG LV + D Q Sbjct: 240 QLSNHQ-AEPHIRSGRLVTVLDDYQ 263 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 78.2 bits (191), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 112/257 (43%), Gaps = 6/257 (2%) Query: 9 NLASLRAFDAAARHGCFSRAAEEVHVTPGAISHQVRALEEDLGLQLFKRHGKRITITETG 68 N L+ F A G AA+ + T A+S + LEE L L R +R+ +T+ G Sbjct: 4 NSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEG 63 Query: 69 ERFATTIRKALGEIAQAADHLRSLNRQQ---RLVISATPSFASRWLAPRLWKFIDAHPEI 125 F R L + +A + +R + RQQ RL I A F + P + +F +P+I Sbjct: 64 RLFLKKARAILAAMDEAEEAIR-VRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQI 122 Query: 126 EVVLQSGSHLVDLRLDGVDIGIRFGRGQYSGVVTEKLSEDYYYPVAAPGYRGSRSRKLTR 185 + L S + DL DI IR G Q S + L+ + + +A+P Y R T Sbjct: 123 TLELTSNDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYL-QRHGMPTT 181 Query: 186 PADLAHCTLLRMDTRESWRPW-LQLAGLDLPEPRGTLVVEDSSVTLRHAVEGKGVALSRH 244 P LA LL ES W ++ AG + L A+ G+G+A Sbjct: 182 PEQLAGHQLLGFLQFESGNTWPIRHAGGEGLTVTPALFASSGETLRALALHGQGIASLAD 241 Query: 245 TIAWQEIASGTLVRLFD 261 + +IA+G LVR+ + Sbjct: 242 YMTRDDIAAGRLVRILE 258 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 638,717 Number of extensions: 26533 Number of successful extensions: 110 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 12 Length of query: 316 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 234 Effective length of database: 730,157 Effective search space: 170856738 Effective search space used: 170856738 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)