BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4657.p
         (230 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096158|ref|YP_001101233.1| lipoate-protein ligase B [Hermi...   327   3e-91

>gi|134096158|ref|YP_001101233.1| lipoate-protein ligase B
           [Herminiimonas arsenicoxydans]
          Length = 216

 Score =  327 bits (838), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 156/216 (72%), Positives = 179/216 (82%), Gaps = 1/216 (0%)

Query: 13  AGAARPQIVRRGVEPYEASFAAMRAYTDARSADTPDQLWIVEHPPVYTLGLGADRAHVLN 72
           + +  P I +RG E YE ++AAMRA+TDAR+A T D+LWIVEHPPV+TLGL AD  HVL+
Sbjct: 2   SASTSPLIRQRGRESYEITYAAMRAFTDARTAQTADELWIVEHPPVFTLGLAADPTHVLD 61

Query: 73  PHDIPIVQTDRGGEVTYHGPGQVVIYLLMDLRRNRSGARLFAREFVHNIEEAVIATLAAY 132
            HDIP+VQTDRGGEVTYHGPGQVVIYLL+DLRRN + AR+FARE V+ IE+AVI TLAAY
Sbjct: 62  AHDIPVVQTDRGGEVTYHGPGQVVIYLLLDLRRNHADARIFARELVNKIEQAVIDTLAAY 121

Query: 133 NLAGVRKEGAPGIYAADGPWQGAKVAALGLKIRGNGCTYHGVSLNVAMDLAPFSWINPCG 192
           NLA  RK GAPGIY +DGP QGAK+AALGLKIRGNGCTYHGVSLNVAMDL PFSWINPCG
Sbjct: 122 NLACERKAGAPGIYLSDGPLQGAKIAALGLKIRGNGCTYHGVSLNVAMDLTPFSWINPCG 181

Query: 193 YEGLATVDMQTLGATNARLADVQDLLADQLIARFAG 228
           YEGL T+DMQ+LGA    L  VQD LA++L    +G
Sbjct: 182 YEGLVTIDMQSLGAQTT-LTAVQDTLAEKLTRHLSG 216


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 415,526
Number of extensions: 17609
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 151
Effective length of database: 740,042
Effective search space: 111746342
Effective search space used: 111746342
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)